FMO13206.5prime Sequence
1158 bp (1061 high quality bases) assembled on 2013-02-11
> FMO13206.5prime
CAGTCGACATGGAAACTTGCGGCCTTATTTGTGTGAGCAGGGACTACGAG
AAGTTCCTGATGCGCTGCTCCTACTGTCCAACGGACGTGGAGGTGGCCCA
GTGGCAGGAGTTTGTGCTGCACATCCGCAACGTGCATAGCAAAGTAAGGA
GCATGGAAGACGACTTCGAGCCAGTGGGGGAAAATTCTACGGAGTCTGGG
CACGTAGATCCTCCAGAGGAGAAACCCCAAGCGGAAGAGTCGATATTCCA
GCAAGACGAATCGGCGGACGGAGCCTGTGTACAGCTGCATATTGACGCAG
TGCGTTCGTCGACAAACGAGACTGAGGAGTCGGACGTATCTTTGGTTACA
GATGAAGAAGAATCCGTCCAGGACGAGGATCCAAGTGAACCAGCTCTTGA
TGATGCCAATTTAAAAACCACACCCACATACAAGTTTCATCCATCCTTCT
TTCGCCGAGATCACCGAACCATAAAGTTCATAGAGATCTACAAGGAACAC
CCGTGCCTTTGGAATCCCGCTCACAGCGACTACAAGGAACCCAAGAAATG
CAAAGAAGCCCTGAAGCGTATGGCCATTGACTTGGAGGCAACTGTATCCG
TATTCCTGAACGAGATGGCCTTAAAGCTGGCCATCAAGAAAGTCCACATG
CAGTTCAACACCGTGCACAAGCGGGTGGTGTCTGGAAAACAGAAACCTCA
ATCGCTGGCTTTCAGTATATACAAATTGTGTTGCTTCTTGAACGCTAGCA
ACGATGAAGAAGGGGCTACGAATAACGAAAAAATTAAGCTTGATTTCTCC
AAGAAAAACAAGCTGACTACCGACCTGATAGAGATGTACGCAAACTTTCC
GCAGCTATACGACTCCAACCACAAGGAGTTCTCCAATATGAGCTCTCGAA
AACAGGCATACGAGAGCATGGCTGCGGAAATCTCAGTGCCCAATGTGACA
TCAACAGCGATGACATATTCCGCGCCATCCAGATCCCCGCCAATGGTACT
ACAGAACACTAAGCAATGCCATTTATGCCGGAAGTACAAGCCGAGAAGTT
CTACCTAGAAGGTGGTGTTCGGTTCATGCTTGCAAGAATGTACCAGCCAG
CGGCCTGGATCTGCGAATTTGCCACACAGAAATACGTCTCTCGGATTCAT
GTCCTGGC
FMO13206.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:40:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1602-RA | 1901 | CG1602-RA | 77..1216 | 9..1156 | 5270 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:40:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7518435..7518860 | 434..9 | 2130 | 100 | Minus |
| 2R | 25286936 | 2R | 7518025..7518380 | 788..433 | 1780 | 100 | Minus |
| 2R | 25286936 | 2R | 7517696..7517969 | 1059..787 | 1115 | 97.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:40:24 has no hits.
FMO13206.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:57:24 Download gff for
FMO13206.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1602-RA | 62..1154 | 9..1104 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:04:24 Download gff for
FMO13206.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1602-RA | 77..1169 | 9..1104 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:24:37 Download gff for
FMO13206.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1602-RA | 77..1169 | 9..1104 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:24:37 Download gff for
FMO13206.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7517627..7517967 | 789..1135 | 94 | <- | Minus |
| 2R | 7518025..7518378 | 435..788 | 100 | <- | Minus |
| 2R | 7518435..7518860 | 9..434 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:04:24 Download gff for
FMO13206.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3405132..3405472 | 789..1135 | 94 | <- | Minus |
| arm_2R | 3405530..3405883 | 435..788 | 100 | <- | Minus |
| arm_2R | 3405940..3406365 | 9..434 | 100 | | Minus |
