FMO13207.5prime Sequence
1123 bp (1060 high quality bases) assembled on 2013-02-11
> FMO13207.5prime
CAGTCGACATGTCTTCGGCCAGAGACCTTATCAAAGTCGACATAGAATGG
GGCATGGAGCGCCTGGTGCGAGCTCAGCAAGTGGTGGAGCTGCGGCCCTA
TGACATCGAGTCCTGGAGTGTCATGATCCGAGAGGCCCAAACGCGGCCAA
TCCACGAAGTACGCAGTCTTTACGAGTCGCTAGTTAATGTGTTTCCGACA
ACCGCTCGGTACTGGAAGCTATACATTGAGATGGAGATGCGCAGCCGGTA
CTATGAACGCGTGGAGAAACTTTTTCAACGCTGCCTAGTCAAGATTTTGA
ACATCGACCTCTGGAAGCTCTATCTTACCTACGTGAAGGAAACCAAGTCG
GGTCTAAGTACTCACAAAGAAAAAATGGCCCAGGCTTATGATTTTGCACT
GGAGAAAATCGGCATGGATCTACACTCGTTCAGCATCTGGCAGGATTACA
TATACTTTCTGCGGGGCGTTGAAGCAGTGGGCAACTATGCAGAGAACCAA
AAGATCACAGCAGTGCGCCGCGTCTATCAAAAGGCTGTAGTCACACCTAT
CGTGGGCATCGAGCAGTTGTGGAAGGACTATATCGCATTCGAGCAAAACA
TAAACCCGATTATATCAGAGAAGATGAGTCTGGAGCGATCTAAGGATTAC
ATGAACGCTCGTCGTGTTGCCAAAGAGTTGGAATACCACACAAAGGGTCT
CAATCGCAATCTGCCAGCCGTCCCACCCACACTCACAAAAGAGGAGGTGA
AGCAAGTGGAGCTGTGGAAGCGCTTTATCACGTATGAGAAGTCTAATCCC
TTGCGCACTGAAGATACGGCCCTAGTAACCCGTCGTGTCATGTTCGCCAC
GGAGCAATGTTTGCTGGTGCTCACCCACCACCCGGCAGTGTGGCACCAGG
CCTCCCAATTCCTGGACACCAGTGCTCGCGTGCTCACCGAAAAAGGCGAC
GTCCAGGCGGCCAGATTTTTGCGGACGAGTGTGCTAATATACTGGAACGG
TCTATAACGGCGTGCTAAACCGAAATGGCGTTGCTATATTTTGCCTATGG
CGGACTTTGAAGAAGGACGGCCTCAGTACGAAAAGGTGCCACCCTTATTG
TTACAACAAGCCTGTTAGTGCGA
FMO13207.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:40:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| su(f)-RG | 2668 | CG17170-RG | 382..1462 | 9..1089 | 5255 | 99.4 | Plus |
| su(f)-RE | 2574 | CG17170-RE | 288..1368 | 9..1089 | 5255 | 99.4 | Plus |
| su(f)-RF | 2909 | CG17170-RF | 288..1227 | 9..948 | 4700 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:40:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 23097793..23098115 | 45..367 | 1615 | 100 | Plus |
| X | 23542271 | X | 23098614..23098918 | 644..948 | 1525 | 100 | Plus |
| X | 23542271 | X | 23098280..23098556 | 368..644 | 1385 | 100 | Plus |
| X | 23542271 | X | 23099218..23099359 | 948..1089 | 460 | 94.4 | Plus |
| X | 23542271 | X | 23097696..23097732 | 9..45 | 185 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:40:30 has no hits.
FMO13207.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:57:25 Download gff for
FMO13207.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| su(f)-RE | 300..1390 | 1..1095 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:04:27 Download gff for
FMO13207.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| su(f)-RE | 283..1373 | 1..1095 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:24:41 Download gff for
FMO13207.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| su(f)-RE | 283..1373 | 1..1095 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:24:41 Download gff for
FMO13207.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 23097793..23098115 | 45..367 | 100 | -> | Plus |
| X | 23098280..23098555 | 368..643 | 100 | -> | Plus |
| X | 23098614..23098917 | 644..947 | 100 | -> | Plus |
| X | 23099218..23099364 | 948..1095 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:04:27 Download gff for
FMO13207.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| XHet | 76611..76933 | 45..367 | 100 | -> | Plus |
| XHet | 77098..77373 | 368..643 | 100 | -> | Plus |
| XHet | 77432..77735 | 644..947 | 100 | -> | Plus |
| XHet | 78036..78182 | 948..1095 | 94 | | Plus |
