FMO13208.5prime Sequence
1132 bp (1010 high quality bases) assembled on 2013-02-11
> FMO13208.5prime
CAGTCGACATGAGTGCGGCCAAGAAGTACAAGCCCATGGACACAACTGAG
CTGCACGAGAACACAGAGAATATTGCCGCCTGCCTGAAGAAGGCCGAGAA
CGTCGCCCCCACCGCTGCTGCCGCCTCGAGCGTGGGCCGCAGTGCCTTCG
CTGCCCAAAACATGAATTCTGCGTCCACCAACGGCGAGCGCCTGCCAAAC
TTCTCCAAGCTAGGCGGCAGCCATGGCGAGATCCGCACGGCTTCAACTAC
CTCAAATCTCCTCAATCGCATGGGGGCTATTCACAACAGCAAGCCTGGCG
ATGTCAAGAAGATAGTGATTAAGAACTTTAAGGATAAGCCTACACTGCCC
GATAACTATTCCAAGGACACGTACGTGAAGCTTGAAGAAGCCGTTATCGC
CATCCAACTCTCCAAGCCCATTAAATATTCGCTGGAGGAGCTCTACCAGG
CGGTGGTGAACATGTGTAGCCACAAGATGGATGCACAATTATACGCGAAA
CTCAAGGAGCTAACAGAGCAACACGTAAAGCGCAATATTAAGCTCAAGGA
GCTCACCGGCGGTAGCATGGACAAACTGATTTTGCTGGAAAAGATCAACC
ACTGGTGGCTCTCGTTCTGCCAACAAATGATCATGATTCGCAGCATATTC
TTGTATATGGATCGAACTTATGTGCTGCAAAATTCGACCGTTCACTCGAT
TTGGGACATGGGGCTGGACCTTTTTCGCATCCATTTTGCTCAAAACAGCG
TTGTCCAAAAGCGAACCGTCGACGGTTTACTAACGCTTATTGAAAAAGAA
CGACAAGGCTCCACCGTGGACCGTGGTTTGCTGAAGAGCTTGGTTCGCAT
GTTATGCGACCTGCAGATCTACACCAGCTCCTTTGAGGAGAAGTTCCTCG
ACGCACCAATCATTGTATAAGCTGAGAGTCAACGCAGATGCAGACTGGAA
GTTCCCGAGTACTTACACACGTCAACAGCGTTTGGCGAGGAGACGAGCGT
TGCGTCACTATTCTGGACCTCGAGCACCAACATCCACCTGATTTACATGG
TGGAAAAGAGTACTTGCGAACACCTACGTCATATTGGCAAGCTGGATTCA
ATTGTTGGAAAGACACGACTGATGACCTAACC
FMO13208.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:40:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cul4-RB | 3405 | CG8711-RB | 389..1480 | 9..1086 | 4945 | 98 | Plus |
| Cul4-RA | 3346 | CG8711-RA | 393..1484 | 9..1086 | 4945 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:40:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8104746..8105152 | 977..578 | 1705 | 98 | Minus |
| 2R | 25286936 | 2R | 8105525..8105849 | 333..9 | 1625 | 100 | Minus |
| 2R | 25286936 | 2R | 8105213..8105458 | 578..333 | 1230 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:40:39 has no hits.
FMO13208.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:57:26 Download gff for
FMO13208.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cul-4-RA | 385..1482 | 2..1089 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:04:31 Download gff for
FMO13208.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cul-4-RA | 389..1486 | 2..1089 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:24:43 Download gff for
FMO13208.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cul4-RA | 389..1486 | 2..1089 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:24:43 Download gff for
FMO13208.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8104691..8105151 | 579..1030 | 97 | <- | Minus |
| 2R | 8105213..8105457 | 334..578 | 100 | <- | Minus |
| 2R | 8105525..8105853 | 2..333 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:04:31 Download gff for
FMO13208.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3992196..3992656 | 579..1030 | 97 | <- | Minus |
| arm_2R | 3992718..3992962 | 334..578 | 100 | <- | Minus |
| arm_2R | 3993030..3993358 | 2..333 | 98 | | Minus |
