FMO13210.5prime Sequence
1159 bp (1066 high quality bases) assembled on 2013-02-11
> FMO13210.5prime
CAGTCGACATGTGTCGCAGGCGTAAAGGAGGTCGTTGCACCAAGGGCACA
GCGGGCTTCGCTTACGTCGGCGGCGCATGCGTGGTGAACAAGCGACTGGA
GAAGGTGAACAGCGTGGCCATCATCGAGGACACCGGCGGCTTCAGCGGCA
TCATCGTGGCTGCCCACGAAGTTGGACATCTGTTGGGAGCGGTGCACGAC
GGTTCGCCACCGCCCAGCTACTTGGGCGGACCGGGCGCCCAGCGGTGTCG
CTGGGAGGATGGCTACATCATGTCCGATCTGCGTCACACGGAGCGGGGTT
TCCGATGGTCCGCCTGCACGGTGCAGAGCTTCCACCACTTCCTCAATGGA
GACACGGCCACCTGCCTGCACAACGCCCCTCATGAGGACAGCGCCCTGGG
TAGATCTCTGCCAGGAACCCTGCTCTCGCTGGACGCCCAGTGCCGCAGAG
ATCGGGGAACGTATGCCTGCTTCAAGGATGAGCGAGTGTGTGCCCAGCTC
TTCTGCTTCGACGCCCAGACGGGATACTGTGTGGCCTACAGGCCAGCGGC
CGAAGGATCGGCCTGCGGAAATGGTTATCACTGTCTGGATGGTCGTTGTA
CACCACTGCCCTCGAACATCATTCCCGATTACGGACACAACTATCGTTTA
GTCTACAATGTAACCAGCAGCAGCAGCAGCACCAGCAACGGGGCAAAGCA
ACAGCCACCGAGCAACAAGGACGAGAATCAGAGACAGCAGCAGCAGCAGC
AACAGGCGCAGCAGCAACTACAGGATGGGCTGCCCGATGAAGAGAACGAG
GCGACTGCCGGCATTCAGAGCAATGAAGCGATTGAGCGGCAAAAACGTAA
GTTCCCCACACACCCACAGCAGCAACAAGTGCTGCGCAGAATCAGCAACA
CCAGCAACACCAGCAACATCGGCAACATCAGCAGACCCACACCAACCACC
GCCAAACCGATACCACATCATCATTTCTCGACGCGTACTTTAAAAACTGC
AGCCTTGCATGACGCCTGGATCGGCAGCAGCAGACACAACACCACACACC
TCGTGTCGTCGTCGTCAGCTCCGCAACAAGCAGCAGGCAGCGGCATCCGC
AAGCAAAGCAGCAGCGCAGTGCCACAAATTGCGGATGGCACTCACTTCCG
AACGCTACG
FMO13210.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:39:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9850-RE | 4642 | CG9850-RE | 2312..3465 | 9..1147 | 5230 | 97.9 | Plus |
| CG9850-RF | 3585 | CG9850-RF | 2312..2963 | 9..660 | 3260 | 100 | Plus |
| CG9850-RD | 4388 | CG9850-RD | 2312..2962 | 9..659 | 3255 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:39:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23756048..23756551 | 1147..659 | 1625 | 93.7 | Minus |
| 2R | 25286936 | 2R | 23757695..23757926 | 578..347 | 1160 | 100 | Minus |
| 2R | 25286936 | 2R | 23757987..23758151 | 346..182 | 825 | 100 | Minus |
| 2R | 25286936 | 2R | 23758474..23758603 | 183..54 | 650 | 100 | Minus |
| 2R | 25286936 | 2R | 23757415..23757494 | 658..579 | 400 | 100 | Minus |
| 2R | 25286936 | 2R | 23760621..23760667 | 55..9 | 235 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 18:39:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6710..7079 | 726..1115 | 245 | 58 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2356..2500 | 835..973 | 206 | 63.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2258..2493 | 685..949 | 186 | 59.9 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 123..195 | 835..909 | 136 | 66.7 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9153..9225 | 835..909 | 136 | 66.7 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 6593..6628 | 892..927 | 126 | 83.3 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 8049..8084 | 892..927 | 126 | 83.3 | Plus |
FMO13210.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:57:16 Download gff for
FMO13210.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9850-RB | 799..1971 | 1..1159 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:04:09 Download gff for
FMO13210.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9850-RE | 2302..3478 | 1..1159 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:24:24 Download gff for
FMO13210.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9850-RE | 2302..3478 | 1..1159 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:24:24 Download gff for
FMO13210.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23758476..23758602 | 55..181 | 100 | <- | Minus |
| 2R | 23760622..23760672 | 1..54 | 92 | | Minus |
| 2R | 23756035..23756551 | 659..1159 | 94 | <- | Minus |
| 2R | 23757415..23757494 | 579..658 | 100 | <- | Minus |
| 2R | 23757695..23757926 | 347..578 | 100 | <- | Minus |
| 2R | 23757987..23758151 | 182..346 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:04:09 Download gff for
FMO13210.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19643558..19644074 | 659..1159 | 94 | <- | Minus |
| arm_2R | 19644938..19645017 | 579..658 | 100 | <- | Minus |
| arm_2R | 19645218..19645449 | 347..578 | 100 | <- | Minus |
| arm_2R | 19645510..19645674 | 182..346 | 100 | <- | Minus |
| arm_2R | 19645999..19646125 | 55..181 | 100 | <- | Minus |
| arm_2R | 19648145..19648195 | 1..54 | 92 | | Minus |
