FMO13213.5prime Sequence
1169 bp (1080 high quality bases) assembled on 2013-02-11
> FMO13213.5prime
CAGTCGACATGCCACCCTTTGAAGAGGGTGAATCCAAGCCAGAGGAGCAG
ATACCTCTAAAGCCGCCCCGACGCCACAAGAAGATGAAGTCAGCGGACCA
AGAGGCCGCCCAAACGCCGGCGGAGGATCACGAGGAGGAGCAATTGCTGC
CGGGCAGCGGGACGAGCAATCTGCGTTATGCCCGGGCCAATTTGAGCCAG
AGCAGCCTGATGCTGAGCCACCAGCAGGGCTCCTTCGAATCGTCAACCGA
ACGAACGGCGAGCAGTGAGACCCTGGATGTAATGCCGATATCGAGGCGCT
ACCAGGTGCATCCACAGCCGAACCGCTTGGGGATTCGGCAGCCAGCCTCG
GCCTTGGCGAGCGCTCTGCATGCCACTGCCAGATTGGCGGCCAGTGTGGA
TGCCTATACGGCGGCGGCTACAGCCACAGCGGCAACCGGTGACTACGGCG
ATTATATGCGCCCGCAACCGAACCTCGGTCACGCCCACCAACTGCCCCTC
ACCCAGACAACCCAGACAGCCCAGCCCCTGCACCACCAGCTGCCCGCTCA
CCAGCTGGGCAATCTGAGAGCGAGCAATTTTGTGGGGTCGTCGCGGTATC
TCTATCACAGCCAGTTTAATTCGAATTCGCCGCAAACGAGACGCTTCACT
GCGCAGCGAGACGGGTCGCCAGCATATGCGGCTTCAGTGGCGGCAGCTTC
AGCGGCGGCCGCAGCTTCAGCAGTAGCACCGATAGCGCCACTAGCACCAC
TAGCCTCCATAGCATCGCCCCCATTTGCGGCCCAGCCGCCGCCCTTTCAG
TTGCGCACCTACCAACAGAATCAATCCTACCGCTTTCAGCCGCGCGGACA
CCATCGCACCGCCAGCAGCAGCATGTCGCAATCCGGCGAGGATCTCCACT
CGCCCACCTACCTGTCCTGCGGAAGCTCCAGCTTAGTCGGGCCAAGCTAA
AGGCATCCAGCAAGACGTCCGCCCTGCTCCCCGGATTCGCCATGGTGGCG
ATGGTGGAGGTGCAACTGGATCACGATACGAATGTACCACCGGGCATGCT
GATAGCCTTCGCCATCTGCACCACCCTCCTGGTGGCGGTGCCACATGCTA
CCTGATGAATCAGCACCTTTTCTGCAAATTGAAACGGTGTGTAATTGCAA
GATCTGTCCGAATTCCCCA
FMO13213.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:41:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| olf186-F-RG | 4582 | CG11430-RG | 2270..3414 | 8..1146 | 5430 | 98.7 | Plus |
| olf186-F-RE | 3581 | CG11430-RE | 1567..2711 | 8..1146 | 5430 | 98.7 | Plus |
| olf186-F-RF | 2407 | CG11430-RF | 925..1239 | 838..1146 | 1280 | 95.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:41:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17856810..17857800 | 8..997 | 4875 | 99.7 | Plus |
| 2R | 25286936 | 2R | 17859257..17859354 | 994..1091 | 490 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 18:41:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| roo | 9092 | roo DM_ROO 9092bp | 1063..1163 | 678..778 | 136 | 59.4 | Plus |
FMO13213.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:57:32 Download gff for
FMO13213.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| olf186-F-RE | 1301..2464 | 1..1159 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:04:55 Download gff for
FMO13213.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| olf186-F-RE | 1562..2725 | 1..1159 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:25:01 Download gff for
FMO13213.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| olf186-F-RE | 1562..2725 | 1..1159 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:25:01 Download gff for
FMO13213.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17856805..17857797 | 1..994 | 99 | -> | Plus |
| 2R | 17859258..17859375 | 995..1113 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:04:55 Download gff for
FMO13213.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13744310..13745302 | 1..994 | 99 | -> | Plus |
| arm_2R | 13746763..13746880 | 995..1113 | 95 | -> | Plus |
