Clone FMO13214 Report

Search the DGRC for FMO13214

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:132
Well:14
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG4822-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO13214.5prime Sequence

1193 bp (1059 high quality bases) assembled on 2013-02-11

> FMO13214.5prime
CAGTCGACATGGAAACTGCCAGCAGCGTAAAAGGCAGTACAACCTCCCAA
ATCAGCTCCCTTCAATATAGCAGCGACATTAACGCCGATAGCCTCGAGCC
CGATCAATCTGAGGACTTTCAAACAGTCCTCGGCCTCAAGTATTTGCCAT
CCTGGCCAGCGGTAAATTTGCAGTTTTCGGAACTATGTTATGTGGTTCCC
GACCAGACCAATGCTTCAAAAACAAAGACGATTTTGCGGAGAGTCAATGG
AATGTTTCACTCTCACGAACTTACTGCGATTATAGGGCCTTCAGGCGCTG
GTAAAACCACACTGCTAAACCTGCTGGCGGGCTTTGGCGCCGTGTGCGAA
TCCGGCGAGATTTTGGTAAACAACAGTCCGCGAGATATGCGAGTCTTTCG
CAAAATGTCTCGATATATAATGCAGACTGATGTCCTGGACTCACAGTTTA
CCGTACTAGAAATGATGATTTTGGCGGCAAACTTGAAGTTGGGAAAAGAA
CTAAATTTAAAACAAAAGCTAGAAGTGATTGACGAAATTTTGGGAATGTT
GCGCCTAAAAGACACCCTAAACACCATGGCTCAAAAGCTATCTGGGGGTG
AGCGAAAGCGTTTATGCATTGCCCTTGAGCTGGTCAACAACCCACCTGTC
ATCTTTCTAGATGAACCTACAACTGGTTTAGACGATTTATCGAGTTCACA
ATGCATTGCCCTACTCAAAGTTTTGGCCGCCGGGGGGCGCACTGTGATCT
GCTCCATCCATACGCCATCTGCCAAGATCTTCGAGATGCTCGATGCAGTC
TACGTTCTAGCCGAAGGCCAGTGCGTCTACCAAGGAAAGGGGTCCAACAT
TGTACCTTTCTTGAAGAACTTTGGGCTTTGTTGTCCAATAACCTACAACC
CGGCTGACTTCATTATCGAAGTTGCTTGCCTTGAGTATGGCGGGTCCTAT
CACGAGCCAATGGTAGAAGCCGTGGCACGGCAAAGTTGCGCGATGGAGTC
CTCCAGCAGTGAGGTGAACAACACACCAAACCGACACCACATCGGGGGCA
TCGTCGTTACGATGGGATCAGTTGACGAAAGAATAGCCAAACTTTGGAGG
CCAATGTACCTGGTGCTACGTACAGCTATGCCTTGTGCCATGCTATCCAA
TGTGGAGAAGATAAGCTTCGTACTCAGGCCTTAGTCTCACTGA

FMO13214.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:41:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG4822-RF 2885 CG4822-RF 600..1778 9..1165 5240 97.5 Plus
CG4822-RE 2749 CG4822-RE 355..1533 9..1165 5240 97.5 Plus
CG4822-RB 4008 CG4822-RB 1723..2901 9..1165 5240 97.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:41:15
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 118482..118874 1058..674 1680 96.9 Minus
2L 23513712 2L 119828..120032 213..9 1025 100 Minus
2L 23513712 2L 118931..119077 673..527 735 100 Minus
2L 23513712 2L 119431..119555 337..213 625 100 Minus
2L 23513712 2L 119134..119237 527..424 520 100 Minus
2L 23513712 2L 119288..119376 425..337 445 100 Minus
Blast to na_te.dros performed on 2014-11-28 18:41:16 has no hits.

FMO13214.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:57:33 Download gff for FMO13214.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4822-RB 1943..3083 9..1129 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:04:58 Download gff for FMO13214.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4822-RB 1723..2863 9..1129 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:25:03 Download gff for FMO13214.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4822-RB 1723..2863 9..1129 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:25:03 Download gff for FMO13214.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 119288..119375 338..425 100 <- Minus
2L 119431..119554 214..337 100 <- Minus
2L 119828..120032 9..213 100   Minus
2L 118399..118874 674..1129 95 <- Minus
2L 118931..119076 528..673 100 <- Minus
2L 119134..119235 426..527 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:04:58 Download gff for FMO13214.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 118399..118874 674..1129 95 <- Minus
arm_2L 118931..119076 528..673 100 <- Minus
arm_2L 119134..119235 426..527 100 <- Minus
arm_2L 119288..119375 338..425 100 <- Minus
arm_2L 119431..119554 214..337 100 <- Minus
arm_2L 119828..120032 9..213 100   Minus