FMO13214.5prime Sequence
1193 bp (1059 high quality bases) assembled on 2013-02-11
> FMO13214.5prime
CAGTCGACATGGAAACTGCCAGCAGCGTAAAAGGCAGTACAACCTCCCAA
ATCAGCTCCCTTCAATATAGCAGCGACATTAACGCCGATAGCCTCGAGCC
CGATCAATCTGAGGACTTTCAAACAGTCCTCGGCCTCAAGTATTTGCCAT
CCTGGCCAGCGGTAAATTTGCAGTTTTCGGAACTATGTTATGTGGTTCCC
GACCAGACCAATGCTTCAAAAACAAAGACGATTTTGCGGAGAGTCAATGG
AATGTTTCACTCTCACGAACTTACTGCGATTATAGGGCCTTCAGGCGCTG
GTAAAACCACACTGCTAAACCTGCTGGCGGGCTTTGGCGCCGTGTGCGAA
TCCGGCGAGATTTTGGTAAACAACAGTCCGCGAGATATGCGAGTCTTTCG
CAAAATGTCTCGATATATAATGCAGACTGATGTCCTGGACTCACAGTTTA
CCGTACTAGAAATGATGATTTTGGCGGCAAACTTGAAGTTGGGAAAAGAA
CTAAATTTAAAACAAAAGCTAGAAGTGATTGACGAAATTTTGGGAATGTT
GCGCCTAAAAGACACCCTAAACACCATGGCTCAAAAGCTATCTGGGGGTG
AGCGAAAGCGTTTATGCATTGCCCTTGAGCTGGTCAACAACCCACCTGTC
ATCTTTCTAGATGAACCTACAACTGGTTTAGACGATTTATCGAGTTCACA
ATGCATTGCCCTACTCAAAGTTTTGGCCGCCGGGGGGCGCACTGTGATCT
GCTCCATCCATACGCCATCTGCCAAGATCTTCGAGATGCTCGATGCAGTC
TACGTTCTAGCCGAAGGCCAGTGCGTCTACCAAGGAAAGGGGTCCAACAT
TGTACCTTTCTTGAAGAACTTTGGGCTTTGTTGTCCAATAACCTACAACC
CGGCTGACTTCATTATCGAAGTTGCTTGCCTTGAGTATGGCGGGTCCTAT
CACGAGCCAATGGTAGAAGCCGTGGCACGGCAAAGTTGCGCGATGGAGTC
CTCCAGCAGTGAGGTGAACAACACACCAAACCGACACCACATCGGGGGCA
TCGTCGTTACGATGGGATCAGTTGACGAAAGAATAGCCAAACTTTGGAGG
CCAATGTACCTGGTGCTACGTACAGCTATGCCTTGTGCCATGCTATCCAA
TGTGGAGAAGATAAGCTTCGTACTCAGGCCTTAGTCTCACTGA
FMO13214.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:41:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4822-RF | 2885 | CG4822-RF | 600..1778 | 9..1165 | 5240 | 97.5 | Plus |
CG4822-RE | 2749 | CG4822-RE | 355..1533 | 9..1165 | 5240 | 97.5 | Plus |
CG4822-RB | 4008 | CG4822-RB | 1723..2901 | 9..1165 | 5240 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:41:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 118482..118874 | 1058..674 | 1680 | 96.9 | Minus |
2L | 23513712 | 2L | 119828..120032 | 213..9 | 1025 | 100 | Minus |
2L | 23513712 | 2L | 118931..119077 | 673..527 | 735 | 100 | Minus |
2L | 23513712 | 2L | 119431..119555 | 337..213 | 625 | 100 | Minus |
2L | 23513712 | 2L | 119134..119237 | 527..424 | 520 | 100 | Minus |
2L | 23513712 | 2L | 119288..119376 | 425..337 | 445 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:41:16 has no hits.
FMO13214.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:57:33 Download gff for
FMO13214.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4822-RB | 1943..3083 | 9..1129 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:04:58 Download gff for
FMO13214.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4822-RB | 1723..2863 | 9..1129 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:25:03 Download gff for
FMO13214.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4822-RB | 1723..2863 | 9..1129 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:25:03 Download gff for
FMO13214.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 119288..119375 | 338..425 | 100 | <- | Minus |
2L | 119431..119554 | 214..337 | 100 | <- | Minus |
2L | 119828..120032 | 9..213 | 100 | | Minus |
2L | 118399..118874 | 674..1129 | 95 | <- | Minus |
2L | 118931..119076 | 528..673 | 100 | <- | Minus |
2L | 119134..119235 | 426..527 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:04:58 Download gff for
FMO13214.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 118399..118874 | 674..1129 | 95 | <- | Minus |
arm_2L | 118931..119076 | 528..673 | 100 | <- | Minus |
arm_2L | 119134..119235 | 426..527 | 100 | <- | Minus |
arm_2L | 119288..119375 | 338..425 | 100 | <- | Minus |
arm_2L | 119431..119554 | 214..337 | 100 | <- | Minus |
arm_2L | 119828..120032 | 9..213 | 100 | | Minus |