FMO13218.5prime Sequence
1153 bp (1043 high quality bases) assembled on 2013-02-11
> FMO13218.5prime
CAGTCGACATGACGGGCGCCAAGAAAAGATCGGGAGCACCGTTAGTGGAT
GCAGCTCACTCGAAAGCCCCAAAACCAGGTACAGTTGCCCAAGAAAAAAA
CAGCCAAATTCCAACTGTTTGGAAAAAGGATCATGTAAAAACTCAACTTT
TCGAAAGATCAAACGAAAAGCCATCCAAAAAAAGAACTCCGCTAGTGGCT
CCTAGAGTTCAGCAATCAAAAATTGAAGCGCAAACTTCTCAGGCTGTGGA
AAAAACACAGGAAGACCAAACTTTTGCAGCCACCATAGACAGTTCAACAA
AAAGTCTAAAAAAGTCTCCCAAAAACGAGGGAGAATTATGGGCAGATATT
CAGAAGCTGTCGCCCCACACGGGAATAATAATTCATAGCTTCATAAAGCA
GTACAACGAATCGCTAAATAATCTCAAGAAGAAAGACTTGGTGGTCAGCA
AGAAAATGAGAGCCATCGCCATGGACTCGCTGAAGAAAAAATCGGAAAAT
ATCAGCTTGAAGGAAAAGTTGACAAATATGGAACTGGAGCTGACCCAACT
GAAAACTGATCTTATCGAGCAGCAGGAGAAGAACGCAGAGAACATCCAGA
AGTACACGGAAATCAACAAAAAGTACACCCACTGCGAGCAACATTACGAC
AAGGAGCTGGAAATCATTAAAGTATGTGTTGAGAAGAAAAATTCAGAGCT
CCGAGATGCTCAATCCCGGATGGCCCTGCAGGCGCAAGAGCTGAATAATA
TGCAGCAAACGAATCGTGAGTTAGCTGGAGCCTGCGAGAATTATAAAAAG
GATTTGGAAGAAGCAGAAGTGGCCAAATCTATGATTCTACATGAACTTAC
CGATCTCAAGAGCTCCACGAAGACCTACAGCTTCATTTGAAGATGTGTCT
GCACAAAGGAAAGTTTGAGGCAAACATTTTACAATTAAGCAGCGACTTAA
ATGCAAAGATGCTTGACTGCGCCAGCTTGAAGATCGCATTGAGCAGCTGC
CATAGAGCACAAAGCTTTGTCGAAACTGCACGTGATTTAGAAGCAGTGAT
TGCAGTCGTGATCAGCAACGAATGACTGATCAGCACGAGGGACTTCGACT
TGTTCGCATGAATAAATACGTTAGACTCTTATGAGAGGAGCAGAACTGTT
TCC
FMO13218.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:41:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| c(3)G-RC | 2629 | CG17604-RC | 80..1224 | 9..1132 | 5175 | 97.9 | Plus |
| c(3)G-RB | 2594 | CG17604-RB | 68..1212 | 9..1132 | 5175 | 97.9 | Plus |
| c(3)G-RA | 2617 | CG17604-RA | 68..1212 | 9..1132 | 5175 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:41:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15791932..15792442 | 519..9 | 2555 | 100 | Minus |
| 3R | 32079331 | 3R | 15791652..15791878 | 744..518 | 1120 | 99.6 | Minus |
| 3R | 32079331 | 3R | 15791416..15791586 | 907..739 | 755 | 98.8 | Minus |
| 3R | 32079331 | 3R | 15791218..15791350 | 1044..918 | 420 | 94.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:41:33 has no hits.
FMO13218.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:57:37 Download gff for
FMO13218.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| c(3)G-RA | 123..1247 | 1..1108 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:05:09 Download gff for
FMO13218.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| c(3)G-RA | 60..1184 | 1..1108 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:25:13 Download gff for
FMO13218.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| c(3)G-RA | 60..1184 | 1..1108 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:25:13 Download gff for
FMO13218.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15791656..15791878 | 518..740 | 100 | <- | Minus |
| 3R | 15791147..15791348 | 920..1108 | 92 | <- | Minus |
| 3R | 15791402..15791584 | 741..919 | 97 | <- | Minus |
| 3R | 15791934..15792450 | 1..517 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:05:09 Download gff for
FMO13218.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11617378..11617600 | 518..740 | 100 | <- | Minus |
| arm_3R | 11616869..11617070 | 920..1108 | 92 | <- | Minus |
| arm_3R | 11617124..11617306 | 741..919 | 97 | <- | Minus |
| arm_3R | 11617656..11618172 | 1..517 | 99 | | Minus |
