FMO13219.5prime Sequence
1128 bp (1029 high quality bases) assembled on 2013-02-11
> FMO13219.5prime
CAGTCGACATGGCCTGCTTGAGCACTTCCGGTCGCGTCGTGTGCGGCTCG
CGTCGCCAGCAGGCGCACAAGCTGCTCTATCAGCTCTTCGGATCCCGGCC
AGGATATACAGCCCCGTCCGCCGCAACCGGATTATTCAGTCCGCCCAAAG
TTCAACAGCAGGCCATGCGACTCTACCACGGATTAAGCTTCAGCATGGGC
AAGGATTACCCCGATCTGCTGCAAAGTCCCCACAAGTGCAGCCAATCGCT
GCAGTACTCGCAAAGTTCCAAGGCGAATCTGAGGCAGCACAGCTCGGTCC
ACACACAACAGCCAGCAGGTCCTGTGAGGGAGTTCCAGATCGATCCCTAC
ATCATACTCGATGACGACCTCAAGTACTTCTACGACGATGTGCGATATCT
GCTGAAATCGGGCACATCCCAGCCAGAGTTGGACACCATTGCCAGCTATT
ACTTCGATGGCCAGGGCAAGGCTCTGCGACCCATGGTTACCATGCTGATG
GCCAAGGCGATAAACTATCACCTGAACAACGAGTCACACCAATTAGTACA
CAAACAGCGACAGATCGCCCTCTTTTCGGAGATGGTGCACTCGGCCAGTC
TGGTCCACGACGATGTCATCGATCAGTCGGACTTCCGACGCGGCAAGCCC
AGCGTGAATGCTCTGTGGAACCACAAGAAGGTCACAATGGCTGGTGATTA
CATCTTATCGATTGCCTCGATTATGATAGCTCGTCTGCGCAGCGATGATG
TGACGATCGTGCTGAGTCAGATCTTGACCGATTTGGTCCAAGGCGAGTTC
ATGCAGCTGGGCTCAAGGGAAACGGAGAACGAGCGCTTCGCCCATTATCT
GACCAAGACATACAGGAAGACCGCATCGCTGATCGCCAATGCACTGAAGG
CGACCGCCGTGATTGCCCAGGCCGACGACACGTGGCCGAGTGCCTTCCAG
TACGGACGCACATCGGCTGCCTTTCAGCTGGTCGACGACATGCTGGACTT
TGTCTCTTCACGAGCAGATGGGCAAGCCGACGGCGCCGATTTGAAGCTGG
TCTGGCCACCGCTTCCGTCTCTTTGCATGCAAAAGTACCCGAGCTGATTC
CATGTGATGCGGCGCCTCCACGGACCAG
FMO13219.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:41:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| qless-RB | 2784 | CG31005-RB | 281..1402 | 9..1115 | 5170 | 98.2 | Plus |
| qless-RA | 3218 | CG31005-RA | 715..1836 | 9..1115 | 5170 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:41:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31251682..31251894 | 221..9 | 1065 | 100 | Minus |
| 3R | 32079331 | 3R | 31242598..31242779 | 398..217 | 895 | 99.5 | Minus |
| 3R | 32079331 | 3R | 31241633..31241776 | 682..539 | 720 | 100 | Minus |
| 3R | 32079331 | 3R | 31242171..31242310 | 538..399 | 700 | 100 | Minus |
| 3R | 32079331 | 3R | 31238353..31238487 | 902..768 | 675 | 100 | Minus |
| 3R | 32079331 | 3R | 31240992..31241083 | 770..679 | 460 | 100 | Minus |
| 3R | 32079331 | 3R | 31237974..31238163 | 1080..902 | 430 | 91.6 | Minus |
Blast to na_te.dros performed 2014-11-28 18:41:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Helitron | 564 | Helitron HELITRON1_DM 564bp | 186..233 | 672..719 | 114 | 70.8 | Plus |
FMO13219.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:57:38 Download gff for
FMO13219.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31005-RA | 705..1835 | 1..1118 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:05:14 Download gff for
FMO13219.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| qless-RA | 709..1839 | 1..1118 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:25:16 Download gff for
FMO13219.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| qless-RA | 709..1839 | 1..1118 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:25:16 Download gff for
FMO13219.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31242598..31242774 | 222..398 | 100 | <- | Minus |
| 3R | 31251682..31251900 | 1..221 | 98 | | Minus |
| 3R | 31237968..31238162 | 903..1085 | 91 | <- | Minus |
| 3R | 31238353..31238484 | 771..902 | 100 | <- | Minus |
| 3R | 31240992..31241081 | 681..770 | 100 | <- | Minus |
| 3R | 31241635..31241776 | 539..680 | 100 | <- | Minus |
| 3R | 31242171..31242310 | 399..538 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:05:14 Download gff for
FMO13219.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27068320..27068496 | 222..398 | 100 | <- | Minus |
| arm_3R | 27077404..27077622 | 1..221 | 98 | | Minus |
| arm_3R | 27063690..27063884 | 903..1085 | 91 | <- | Minus |
| arm_3R | 27064075..27064206 | 771..902 | 100 | <- | Minus |
| arm_3R | 27066714..27066803 | 681..770 | 100 | <- | Minus |
| arm_3R | 27067357..27067498 | 539..680 | 100 | <- | Minus |
| arm_3R | 27067893..27068032 | 399..538 | 100 | <- | Minus |
