FMO13220.5prime Sequence
1118 bp (1016 high quality bases) assembled on 2013-02-11
> FMO13220.5prime
CAGTCGACATGGAAAGCGAGCGGCTGCGAATCACGCTGGACAGCGCGGAT
CGGGTTTACTTTGCGGGCGACATAATTCGCGGCGAGATCTGGATGAACGT
CAACAAGCGCACCAAAATACGCGCCATCAAGGTGCAGGTCACCGGCAAGG
GAAAATGCAAATGGATGGAGATCCTGCGCAAGAACTCGAACAACAACGAG
TACTCCCGCAGTCTGTTCTACACCAGCAAAGAGGTGTACGAGCATAGCGA
GACGCCTCTGCCGGATTTTGAGCCGCGTGGCCTGGAACTTTCGGCTGGGG
AGCACACGTTCATCTTCGAGGTGGCGCTGGGTCGCCAGCTACCTTCGAGT
TTCAAGGGCAGCTATGGCGCCATCAAGTACAAGATGCGCGTGCTCATCCA
GCGACCATGGACCTTCGACGAGCGCCACACGATTCCTTTCACCGTGGTGA
AGAACATGCCGCTCCAACCGATGCAACGCAGCATACCCAGTTCGCTGGAG
AAGCAGGTGACCAAGACGATCAGTTTGTTTGGCACTAGACCGATCACCCT
GTTGGCCCTTCTGCCCGAAGATTTTGCGGTGCGCGGAGAGCCGCTTAGGA
TTTGCGCTACTGTGATCAACAACAGCACCACCGCTGTGGAGAAGCTGCGC
TTTACCGTCCTGCAGTACGTGACCTACTACAGCCATGTACCACTGCGGGT
GCAGAAGGTGGAGTGCATAGCGGTGGCCACCAAGGAGACGGGCTCGGTGC
AGAAGAAGACCGAGCGGAGTTTTGCGCACGAGCTGCTCCTGCCCGATGGA
GCCCAGCCGACGGATGAACAGATGAGCGGCGTCATCACCATTGTATACGA
GCTGCGTGTGGAGGCGGTGCTGCGGGGATTCTTTAAGACTTGATCCTTAA
TTTGCCCTTTAAGTGTACTCGCAGATCCATCGATAGCAGAGTTCGCTGCG
TCGCCGCGCGCCACGGCTACGATGGACCACCTGGTCCGGATTGGGCTCGC
ATCTGTTTGAGCCCGCCTGCCGTCTATCCTCACTGGACTCTTCAATGCTC
GGCTTCGACTCATCGAGTTTAGCGAGTGCAGCTCCATAACTCGATACTTG
ACTCTCCCGCGCCATCTG
FMO13220.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:41:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Leash-RA | 3180 | CG4674-RA | 434..1543 | 9..1096 | 4975 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:41:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10893729..10894714 | 123..1087 | 3955 | 97 | Plus |
| 3R | 32079331 | 3R | 10885973..10886087 | 9..123 | 575 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:41:46 has no hits.
FMO13220.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:57:39 Download gff for
FMO13220.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4674-RA | 420..1547 | 1..1104 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:05:19 Download gff for
FMO13220.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4674-RA | 427..1554 | 1..1104 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:25:20 Download gff for
FMO13220.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Leash-RA | 427..1554 | 1..1104 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:25:20 Download gff for
FMO13220.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10885966..10886087 | 1..123 | 97 | -> | Plus |
| 3R | 10893730..10894735 | 124..1104 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:05:19 Download gff for
FMO13220.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6711688..6711809 | 1..123 | 97 | -> | Plus |
| arm_3R | 6719452..6720457 | 124..1104 | 97 | | Plus |
