FMO13221.5prime Sequence
1039 bp (1039 high quality bases) assembled on 2013-02-11
> FMO13221.5prime
CAGTCGACATGGCGGACGTGGAAATTATGCAAACGGTGCAAACGGAAGTG
AAGAAGACCACGAAAAAGGTTAAGAAGTCGTCGAAGCGACGCGAATCCGA
GGTCCAGATCAGCGAGGTCGAGGTGGATGCCACCATCGAGGAAAGAGGTG
GCGAGTACACAAAAGCCATGGACAAGGACTGGCACTCCGGACACTTCTGC
TGCTGGCAATGCGACGAGAGCCTCACCGGACAGCGTTACGTCATCCGGGA
CGATCATCCGTACTGCATCAAGTGCTACGAGAATGTGTTCGCCAATACGT
GCGAGGAGTGCAACAAGATCATTGGCATCGACTCCAAGGATCTGTCCTAC
AAAGACAAGCACTGGCACGAGGCCTGTTTCCTGTGCTTCAAGTGCCATCT
GTCGCTGGTGGACAAGCAGTTTGGAGCCAAGGCGGATAAGATCTACTGTG
GAAACTGCTACGATGCCCAGTTTGCGTCCCGCTGCGATGGCTGCGGCGAA
GTTTTCCGCGCAGGCACCAAGAAAATGGAGTATAAAACCAGGCAGTGGCA
CGAGAATTGCTTCTGCTGCTGCGTCTGCAAGACGGCCATTGGGACCAAGT
CCTTCATCCCGCGGGAGCAGGAGATCTATTGCGCCGGCTGCTACGAGGAG
AAGTTTGCCACGCGCTGCATCAAGTGCAATAAGGTCATCACCTCGGGAGG
TGTTACCTACAAGAACGAGCCGTGGCATCGCGAGTGCTTCACCTGCACCC
ACTGCAACATCACGCTAGCTGGCCAGCGATTCACCAGCCGCGACGAGAAG
CCCTATTGTGCGGAGTGCTTTGGCGAGCTCTTTGCCAAAAGGTGCACGGC
CTGTGTGAAGCCCATAACAGGCATTGGCGGCACACGCTTCATATCGTTTG
AGGATCGCCACTGGCATCACGACTGCTTTGTGTGTGCCAGCTGCAAGCTA
GTCTGGTTGGTCGTGGCTTCATCACGACGGACCCGATATCCTGTGCCCGA
TTGTGGCCAAGCAGAGCTGATGGCAGCTTTCTAGACCAT
FMO13221.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:41:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lmpt-RC | 2099 | CG32171-RC | 187..1203 | 9..1022 | 4965 | 99.5 | Plus |
Lmpt-RF | 2110 | CG32171-RF | 187..1214 | 9..1022 | 4845 | 98.4 | Plus |
Lmpt-RO | 1894 | CG42679-RO | 121..998 | 148..1022 | 4270 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:41:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16912139..16912330 | 148..339 | 960 | 100 | Plus |
3L | 28110227 | 3L | 16921178..16921367 | 682..871 | 950 | 100 | Plus |
3L | 28110227 | 3L | 16913222..16913399 | 337..514 | 890 | 100 | Plus |
3L | 28110227 | 3L | 16920879..16921053 | 511..685 | 875 | 100 | Plus |
3L | 28110227 | 3L | 16911452..16911591 | 9..148 | 700 | 100 | Plus |
3L | 28110227 | 3L | 16921430..16921566 | 864..998 | 570 | 97.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:41:52 has no hits.
FMO13221.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:57:40 Download gff for
FMO13221.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lmpt-RC | 178..1206 | 1..1026 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:05:23 Download gff for
FMO13221.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lmpt-RC | 179..1207 | 1..1026 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:25:24 Download gff for
FMO13221.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lmpt-RC | 179..1207 | 1..1026 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:25:24 Download gff for
FMO13221.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16913224..16913398 | 339..513 | 100 | -> | Plus |
3L | 16920882..16921051 | 514..683 | 100 | -> | Plus |
3L | 16921180..16921366 | 684..870 | 100 | -> | Plus |
3L | 16921437..16921578 | 871..1010 | 97 | -> | Plus |
3L | 16912140..16912329 | 149..338 | 100 | -> | Plus |
3L | 16911444..16911591 | 1..148 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:05:23 Download gff for
FMO13221.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16906324..16906498 | 339..513 | 100 | -> | Plus |
arm_3L | 16913982..16914151 | 514..683 | 100 | -> | Plus |
arm_3L | 16914280..16914466 | 684..870 | 100 | -> | Plus |
arm_3L | 16914537..16914678 | 871..1010 | 97 | -> | Plus |
arm_3L | 16905240..16905429 | 149..338 | 100 | -> | Plus |
arm_3L | 16904544..16904691 | 1..148 | 97 | -> | Plus |