FMO13222.5prime Sequence
470 bp (470 high quality bases) assembled on 2013-02-11
> FMO13222.5prime
CAGTCGACATGGTGTCCGCTCTGAAATGCAGTTTGGCCGTGGCCGTTATG
ATCAGTCTGGCTTGTTCGGCCTACGCCATCAAGTGCTACCAGTGCGAGTC
CCTCACAATGCCCAAGTGTGGCCTGAAGTTCGAGGCTGATGAGACGTTGC
TGCTGGACTGCTCCAGGATCGGACCCCCACGCTACCTGCAGAACTTCTTC
CCCCTGCGGAACGCCACTGGTTGCATGAAGAAGACCCTCGAAAGCGTGGC
CGGACATCCGCAGATCGTGAGGAGCTGCTACTTCGGGGACATCAACAATA
TCCAAGCTGGCTGCCAGTCGGATCCCTCTATGCCGTTCGTTAAGCAGCTG
GGCTGCGATGTCTGCACCAAGGACGAGTGCAACGGATCCTCCTCCCTGGC
CCCCATCGCCGGAGCCATCCTGCTCTTCTTCGGCGTGGCTCGTCTGCTGG
CCGCAAGCTTTCTAGACCAT
FMO13222.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:40:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9336-RA | 678 | CG9336-RA | 108..551 | 9..452 | 2220 | 100 | Plus |
| CG9336-RB | 636 | CG9336-RB | 126..509 | 69..452 | 1920 | 100 | Plus |
| CG9338-RB | 1087 | CG9338-RB | 224..519 | 154..452 | 450 | 77.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:40:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20860681..20860887 | 246..452 | 1035 | 100 | Plus |
| 2L | 23513712 | 2L | 20859724..20859901 | 69..246 | 890 | 100 | Plus |
| 2L | 23513712 | 2L | 20866947..20867141 | 258..452 | 345 | 78.5 | Plus |
| 2L | 23513712 | 2L | 20859273..20859333 | 9..69 | 305 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:40:52 has no hits.
FMO13222.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:57:28 Download gff for
FMO13222.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9336-RA | 98..556 | 1..460 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:04:41 Download gff for
FMO13222.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9336-RA | 101..559 | 1..460 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:24:50 Download gff for
FMO13222.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9336-RA | 101..559 | 1..460 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:24:50 Download gff for
FMO13222.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20859266..20859333 | 1..69 | 94 | -> | Plus |
| 2L | 20859725..20859901 | 70..246 | 100 | -> | Plus |
| 2L | 20860682..20860895 | 247..460 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:04:41 Download gff for
FMO13222.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20859725..20859901 | 70..246 | 100 | -> | Plus |
| arm_2L | 20860682..20860895 | 247..460 | 98 | | Plus |
| arm_2L | 20859266..20859333 | 1..69 | 94 | -> | Plus |
