FMO13223.5prime Sequence
1139 bp (1057 high quality bases) assembled on 2013-02-11
> FMO13223.5prime
CAGTCGACATGGCGAACATCTGGCCACGAATCTTGGTCGGAGCTCTGACC
ATCCTGGTGGCCGTTGGCTATAAGAACTATCGCGATCTCTCGGCGCCCGG
CAAGAGACCCGATCTGGACAACAACGCCTACTGGGGTCCAACATTGAAGG
AACCTTATCGGGAGAACAAGGCCATCCTACCCTTCGACATCAGCGTAAAG
CCAGAGGTTATTGAGGATCTAATCGGTCAGCTGAGTCGTCCTTTGAAAGC
GCAGGCGCCACTGGAGGGTGTGGGTTTCCAATACGGATTCAATGCCAACG
AACTGGCCAAGGTGGTGAAATACTGGCGCGATACATATCTGCCCAAATGG
AGCGAACGGGAGGAGTACCTCAAGAAGCTGGATCACTACCAAACGGAAAT
TCAGGGTTTAAAAATTCATTTTATTCATGCCAAGCCAAGCCAGGTGAAAG
GCCAAAAGCCCAAGAAGGTGCTGCCTCTGCTTCTGATGCACGGATGGCCG
GGAACCGTTCGCGAATTCTACGACTTCATCCCTCTCCTGACCACGCCCAG
TGACAAGAGCGACTACGTCTTCGAGGTTATTGCACCCAGTCTGCCCGGCT
ACGGATGGTCTCAGGGCTCTTCAAAAACTGGATTCGGTGTGGCGCAAGTG
GCGGTGGTGATGCGCAACCTGATGCTCCGAGTGGGATTCGATAAGTTTCT
GGTGCAGGGTGGCGATTGGGGTTCCATAATTGGATCCAATGTAGCCTCAC
TTTTTCCGGAAACGTGCTGGGCTATCATTCTAATATGTGCGGAAATAACA
GCCCTATGGGTCAGTTGAAGATGGTGCTGGCCTCCTTTTTCCCCAGCTGG
TTTGTGGACAGCGAGTATGCGGACTTCTACAAGGACTCGGTCACTTGTTT
AGCACCATAATGGAGGAGATGGGCTATGCCCACATTCAGGCCTCAAGCCA
GACACATCGGCAATGCTTTGATCGACAATCCAACTGGTCTGGCTAGCTAT
ATTTCTGGAGAAGTTCTTCCAAATGACGAATACGGCATTTAGATCGCTTC
CTGACGGGTGGTCTGACCAGAGGATTACTTACCGATCAGCCTTCTGACAA
TGGTGAATGATTCTATTATGGTGAACAATCATTAACACT
FMO13223.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:40:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Jheh2-RD | 1926 | CG15102-RD | 396..1506 | 9..1120 | 5160 | 98.3 | Plus |
| Jheh2-RA | 1621 | CG15102-RA | 91..1201 | 9..1120 | 5160 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:40:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18856235..18856694 | 1069..612 | 1935 | 97.6 | Minus |
| 2R | 25286936 | 2R | 18856883..18857092 | 615..406 | 1050 | 100 | Minus |
| 2R | 25286936 | 2R | 18857204..18857405 | 406..205 | 1010 | 100 | Minus |
| 2R | 25286936 | 2R | 18857651..18857850 | 208..9 | 1000 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:40:58 has no hits.
FMO13223.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:57:30 Download gff for
FMO13223.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jheh2-RA | 83..1165 | 1..1082 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:04:46 Download gff for
FMO13223.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jheh2-RA | 85..1167 | 1..1082 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:24:53 Download gff for
FMO13223.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jheh2-RA | 85..1167 | 1..1082 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:24:53 Download gff for
FMO13223.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18856176..18856691 | 615..1129 | 95 | <- | Minus |
| 2R | 18856884..18857091 | 407..614 | 100 | <- | Minus |
| 2R | 18857204..18857403 | 207..406 | 100 | <- | Minus |
| 2R | 18857653..18857854 | 1..206 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:04:46 Download gff for
FMO13223.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14743681..14744196 | 615..1129 | 95 | <- | Minus |
| arm_2R | 14744389..14744596 | 407..614 | 100 | <- | Minus |
| arm_2R | 14744709..14744908 | 207..406 | 100 | <- | Minus |
| arm_2R | 14745158..14745359 | 1..206 | 98 | | Minus |
