FMO13224.5prime Sequence
1153 bp (1047 high quality bases) assembled on 2013-02-11
> FMO13224.5prime
CAGTCGACATGATTGCTAGTTCAAAAATGTTACTTTCTGCATCGATCCTA
ATATATTTCTTGCTGAATCTGCAATCTTCGAGTGCTGAGATTGCCGACTG
CAGTTTCTATGATACCGTTGATATCTCGGAAGGCCAGAGGCTCTCGAATG
GATCATACCTCTACGAGGGATTACTTATTCCCGCCCATTTGACGGCCAAG
TATGAATTCAAGCTTCTGGCGAATGGAGATAAGGAGCAGGTGCCAAGTCA
CGTGAGAGGATGTGTGTGCAAGCTAAGGACTTGCGTCAGGTTTTGCTGCC
CACATGACCACATAATGGATATGGGCGAATGCTACGCCAACATGACGACG
GAGGAGAACGAATTACTGGACCCCATGCTAAATGTGACCCTGGACGACGG
ATCAGTGGTGCAAAGGCACTATAAGAAGGAGCTCATGGTGCAGTGGGATC
TGCCAAAGCCCTGCGATGATATGTTTTACCTAGACAACCGGGATATAATG
GATGAGTACACCTTGTTCGAGAATGGAAGATTGCTGCGCCACTACGATCA
AGTGTATTTGGACAAGTCGGAGTACTGTCTGCAGCACCGAACATTCGGCG
AAGGTAACAACAACTCCATTCGCATTATACCCCACAACTGCTTGATACTG
CCATCCAGAACGGGACAGACCGTTGTGATGATCACATCGTTGATATGCTT
GGTTCTTACCATCGCCGTGTACCTGTGCGTTAAGAAGCTAATGAATTTGG
AGGGCAAGTGTTTCATCTGTTACATGATGTGCCTATTTTTCGGATACCTG
TTCCTACTCCTTGATCTGTGGGAGTTATCGCTCGATTTCTGTAAAGCAGC
AGGTTTCTTGGGATACTTTTTCGTCATGGCTGCGTTCTTTTGGCTATCTA
TCATCAGTCGGCACTATTGGAAATGTCTTACCAATCCCTGTGCCTCGATG
AACATTCGGTCAGACGTGCGTTTCTGCTATACAGCTGCTTCGCCTGGGCA
ATGCCTTTGGGCTTGACCGGAGTCACCTATCTGGCTGATACGTTGTGACA
ACGAGGGTGCAGCTCCGCGTGGGCGACGAGGCATGCTGATCCTAATACTA
AGCTGTCTTGCATGGGTACTCTATGGACCGAGTGGGGCTCCTGGATTCCT
CTT
FMO13224.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:41:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mthl2-RB | 2035 | CG17795-RB | 105..1250 | 9..1143 | 5235 | 98 | Plus |
| mth-RE | 2420 | CG6936-RE | 817..1508 | 231..922 | 790 | 75.2 | Plus |
| mth-RB | 1882 | CG6936-RB | 364..1055 | 231..922 | 790 | 75.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:41:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5604894..5605406 | 9..521 | 2565 | 100 | Plus |
| 3L | 28110227 | 3L | 5605685..5605865 | 675..855 | 905 | 100 | Plus |
| 3L | 28110227 | 3L | 5605920..5606111 | 850..1040 | 895 | 99 | Plus |
| 3L | 28110227 | 3L | 5605468..5605623 | 520..675 | 780 | 100 | Plus |
| 3L | 28110227 | 3L | 345375..345665 | 521..231 | 330 | 74.2 | Minus |
| 2R | 25286936 | 2R | 17446960..17447119 | 301..142 | 230 | 76.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:41:03 has no hits.
FMO13224.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:57:31 Download gff for
FMO13224.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mthl2-RB | 107..1260 | 9..1153 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:04:50 Download gff for
FMO13224.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mthl2-RB | 105..1258 | 9..1153 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:24:56 Download gff for
FMO13224.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mthl2-RB | 105..1258 | 9..1153 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:24:56 Download gff for
FMO13224.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5604894..5605406 | 9..521 | 100 | -> | Plus |
| 3L | 5605470..5605623 | 522..675 | 100 | -> | Plus |
| 3L | 5605686..5605862 | 676..852 | 100 | -> | Plus |
| 3L | 5605923..5606154 | 853..1079 | 96 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:04:50 Download gff for
FMO13224.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5597994..5598506 | 9..521 | 100 | -> | Plus |
| arm_3L | 5598570..5598723 | 522..675 | 100 | -> | Plus |
| arm_3L | 5598786..5598962 | 676..852 | 100 | -> | Plus |
| arm_3L | 5599023..5599254 | 853..1079 | 96 | == | Plus |
