FMO13225.5prime Sequence
965 bp (965 high quality bases) assembled on 2013-02-11
> FMO13225.5prime
CAGTCGACATGTCGGAGGCCTATTCGAATTCCATACGCAGCCTGAGTCCA
GAGCTGGCCAAAAAGGCGCACGACGAGCTGGGAGAGATACCCGACAGAAT
CGATGAGGATATCGAAACGTTGCGCACTTGGATCTCCAAGCAACCTCATC
TCAAGGCTCGCCAGGATGCCCAGTTCCTGGTCGCCTTCCTGCGTGGCTGC
AAATACAGCTTGGAGAAAACCAAACTCAAGTTGGACAACTTCTATGCGAT
GAGGGGAGCCGTGCCCGAGCTCTACAAGAATCGCATTGTGGGTGAGAAGC
AGCTCAGCATTCTGGACACAGGTTGCCTCCTCCGATTGCCGCAGCCACTG
CAGGCTGATGGTCCTCGCATCCACATCTCCCGCTACGGTCAATACGACTC
GAAGAAGTACTCCATTGCCGAGGTTGTCCAGGTAAACACGATGCTCGGCG
AGATTCAGATAAGGGAAGACGACAATGCTATGATATCCGGCTTTGTGGAG
ATCATCGACATGAAGGGCGTTGGGGCAGGTCACCTATTCCAGTTCGACGC
GGTGCTGGTCAAGAAACTGGCCGTTTTGGGCGACAAAGCGTATCCCTACA
GGCCCAAGGGTTTTCACTTTGTAAATGCGCCCTCCAGTGCAGAGAAGTTC
ATGTCCATTGCCAAGAGCCTGATGAGCGAAAAGATTCGGAAACGGTTTCA
TATACACTCCAAACTGGACAGTCTCTACAAGTATGTGCCCAAGGAATGCT
TGCCAGCTGAGTATGGGGGCAGCAATGGAACCATCCAGGACGTCGTCAGT
ACATGGAGGACCAAGCTCCTGGCCTACAAGCCATTCTTTGAGGAGGAGGC
TTCTTATGGCACGAATGAAAAGCTACGGCGAGGACAGCCCGTTAGCGCCG
AATCACTTTTTGGAATCGAAGGATCCTTCAGAAAACTAGACATCGACGCA
AGCTTTCTAGACCAT
FMO13225.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:42:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12926-RA | 1347 | CG12926-RA | 185..1123 | 9..947 | 4695 | 100 | Plus |
| CG30339-RA | 1023 | CG30339-RA | 154..263 | 136..245 | 235 | 80.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:42:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9608665..9609038 | 695..322 | 1870 | 100 | Minus |
| 2R | 25286936 | 2R | 9609096..9609409 | 322..9 | 1570 | 100 | Minus |
| 2R | 25286936 | 2R | 9608352..9608604 | 947..695 | 1265 | 100 | Minus |
| 2R | 25286936 | 2R | 9602639..9602748 | 245..136 | 235 | 80.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:42:15 has no hits.
FMO13225.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:57:45 Download gff for
FMO13225.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12926-RA | 174..1120 | 1..947 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:05:41 Download gff for
FMO13225.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12926-RA | 177..1123 | 1..947 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:25:36 Download gff for
FMO13225.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12926-RA | 177..1123 | 1..947 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:25:36 Download gff for
FMO13225.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9608352..9608603 | 696..947 | 100 | <- | Minus |
| 2R | 9608665..9609037 | 323..695 | 100 | <- | Minus |
| 2R | 9609096..9609413 | 1..322 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:05:41 Download gff for
FMO13225.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5495857..5496108 | 696..947 | 100 | <- | Minus |
| arm_2R | 5496170..5496542 | 323..695 | 100 | <- | Minus |
| arm_2R | 5496601..5496918 | 1..322 | 98 | | Minus |
