FMO13226.5prime Sequence
1124 bp (1005 high quality bases) assembled on 2013-02-11
> FMO13226.5prime
CAGTCGACATGACGGCAGCCGGCTTTAATTCTATCCTCTGCCTGAGGCAG
TTAGTCCGTCTAAACAGGCGCCAGTATTCAGCCCCTGCGAAATCCGTGCT
TTCCGGCTCACAAACAAATGACCAGGCAACGCCACCACCGACATCGAAAT
CCGCGGACAAAATGCGCGGATGGCAGCTGCACAACTACGGCGATATTGAC
GAGCTGCAGCTCTCTGAAATGCTAAAGATACCCCAGATCCGTTGTTCCAA
CGAGTGCCTGGTACGCATCAGGGCGACGGCAGTGAACCCCATCGACCTGG
CCATGCTCCGTGGTTACGGGGCCACAGTGCTGAACAAGATGCGCTGTCAG
CCGGGCGACGGCATCGAGTTTCCGCTTATTTTGGGCCGCGAGTTCTGCGG
TGAGCTGGTGCAGACGGGAATGGGTGTTTCGCTGCCTCTGGGATCGCGAG
TCTGGGGAGTGGTACCCCTACAGGCCACCATTGGCTCGCATGCGGAGTAT
GTAGCCGTTCCTTCATACTGTCTTGCTCCTGCACCCAAAGAACTGGATGA
TTACGAGGCCGCCAGCGTGTTGTATGCCGGATTGACGGCTTGGTCGGGAC
TGTACATAACTGGAGGCCTGGGTGGTCCATGTGGAGCCACAACAGCTTCC
GGTGGAGGTGCCCACAAGCGGGTCCTAGTCCTTGGCGGCTCCGGTGGCGT
TGGCACATTGGCCATACAAATCCTCAAGTCCCAGAAAGTACAAGTTTTGG
CAACCTGCAGCGAAAATGCCATTGAAATGGTTCGCAATTTGGGAGCCGAT
TTAGTGGTCGACTATAACAACCCGCAGCCATGGAGGAGCTGTGCAATACG
CACCCTATGACATTGTGCTGGACTGCGCTGGACAGTGGTCAGATGCGGCG
GATCGAAGTACGACTTTCGCCAGTACATCACTTCTCATCTCCGTTGCTGG
CACATCGACAGCAGGACTGGGGAGTAGAGCGCTTAAGAATGGTGTTCGAT
TTTGTTCAGACCAACGTAGATCCGTCCCCGCACGCGGAGGCTTGTCAAAT
GGGGTTCTTTAGTCCCGCCTCCAGGATTCATTCTCACGAAACTAGTGGAC
ACGAGGCTGATGCCGCTGATCGAT
FMO13226.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:42:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17221-RC | 1673 | CG17221-RC | 117..1253 | 9..1124 | 4905 | 96.8 | Plus |
| CG17221-RA | 1409 | CG17221-RA | 117..1253 | 9..1124 | 4905 | 96.8 | Plus |
| CG17221-RB | 1319 | CG17221-RB | 37..1163 | 19..1124 | 4855 | 96.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:42:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3040228..3040740 | 9..521 | 2565 | 100 | Plus |
| 2L | 23513712 | 2L | 3040792..3041352 | 522..1069 | 1920 | 94.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:42:20 has no hits.
FMO13226.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:57:46 Download gff for
FMO13226.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17221-RA | 117..1253 | 9..1124 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:05:46 Download gff for
FMO13226.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17221-RA | 117..1253 | 9..1124 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:25:39 Download gff for
FMO13226.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17221-RA | 117..1253 | 9..1124 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:25:39 Download gff for
FMO13226.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3040228..3040740 | 9..521 | 100 | -> | Plus |
| 2L | 3040792..3041397 | 522..1106 | 94 | -> | Plus |
| 2L | 3041453..3041470 | 1107..1124 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:05:46 Download gff for
FMO13226.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3040228..3040740 | 9..521 | 100 | -> | Plus |
| arm_2L | 3040792..3041397 | 522..1106 | 94 | -> | Plus |
| arm_2L | 3041453..3041470 | 1107..1124 | 100 | | Plus |
