Clone FMO13229 Report

Search the DGRC for FMO13229

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:132
Well:29
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG31870-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO13229.5prime Sequence

263 bp (263 high quality bases) assembled on 2013-02-11

> FMO13229.5prime
CAGTCGACATGTCTAGGAACTATGGACCTGGACCTGGAGCCTACATGCTA
CCCAGCAGTTTTGGACAAAAAGGACCTCAGTTCTCCTTCGGCCGCAGAAT
TGACCGCAAAAGAGATGAAAAACCTGGTCCGGGTCCTGCTGCTTATAAGG
TGGATAAAGTGACACGCTACGGAAACGCGGAGGGTCCACAGTTTTCCATG
TATGTTAGGAACTCCAAGATGAAACCCCTCCCCATTCGATTGTCTGCAAG
CTTTCTAGACCAT

FMO13229.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:42:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG31870-RD 1097 CG31870-RD 129..367 7..245 1180 99.6 Plus
CG31870-RA 478 CG31870-RA 129..367 7..245 1180 99.6 Plus
CG31870-RE 537 CG31870-RE 205..426 24..245 1095 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:42:28
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10790426..10790647 24..245 1095 99.5 Plus
Blast to na_te.dros performed on 2014-11-28 18:42:29 has no hits.

FMO13229.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:57:47 Download gff for FMO13229.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31870-RA 103..355 1..253 96   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:05:50 Download gff for FMO13229.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31870-RA 123..375 1..253 96   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:25:46 Download gff for FMO13229.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31870-RA 123..375 1..253 96   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:25:46 Download gff for FMO13229.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10790427..10790655 25..253 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:05:50 Download gff for FMO13229.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10790427..10790655 25..253 98   Plus