FMO13230.5prime Sequence
1112 bp (1026 high quality bases) assembled on 2013-02-11
> FMO13230.5prime
CAGTCGACATGCGGACGCATCTTTTTGCGCTTTGCCTGTCTATGGCTACA
ATAGGCATACCCAAAGCTAATGGAGTCATGGACGATTACGATGCTGAGAT
GGGGGAGTTCATGAATGCTCTACCGAACCTCGATGATACCCCCTATGGCT
TAGGACAGCGATCAGATATCTCAACGGAACCGGAAGAGGATGATATTTTG
GCAAGCCTGGATGATGAGTATGAGGAGGCTAAGCATTGCGTCTGGAACAC
TTGTGACAAGGATCTCAGCGAATCGCGGGGAATCGGAAAGTTTCTGGACC
TACCCTTTATAAAGAAGATAGCAAGTAACCTGAATCCATTCGGCAGCAAG
AAACTTCGCATGCACTTCTATCTCTTTAAGAGGGAGTTCCCTGAGTGTGG
CAGAGAGGTGGATTTCTCAATCGAGCGCAAATGGAGGCATTGTGGCTTTA
ATGCTTCTCTGCCCACACGACTGATGATACACGGTTGGATGAGCCAGTCG
CGTGGCTCTTTCAATCGGGATGTGAAGAATGCATACCTAAAAAAAGGGGA
GTACAATGTGATCGTTGTCGATTGGAGCGCAAGCTCAGCCAACATAAACT
ACTTTTCGGTGGTAAAGCTTATAGAGACCTTTGGAGCTGAGTTGGCCCAA
TTTATAAGGAACCTCAATCGTCAGTTTGGAGCTGACTTCGACAGCATGTA
TCTTATTGGTCACTCCTTGGGAGCTCAGATCGCTGGTTCTGCCGGGAAAC
GTTTGAAACCGGTTAAAGTAAATACAATATTTGCTTTGGATCCCGCAGTC
CAAAGTTCCGTCATCGCGGACTGAATTTCGGATAGATCCCAGCGATGCAA
AGTATGTGGAGTCCATGCATACGAGTGCTAACTTTGGGTTTCGTCGGCCT
ACAGGCAGTGCCACCTTTTATCCAAACTACGGGGCCTATCAGCATAGCTG
CTACTACCTAAGTTGCTCCATATTCGATCATTATCAGATGTCGCCGAGTC
CATCATCGCCTTTGGATCTGGGGACCCTTGCATCGGAACATGGAAGGGGG
CATGCGATAAAGCAGCAACGTCATTCGATTGCTGTGGACTTCGAATCTTA
AGATGTAATTTC
FMO13230.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:42:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6675-RB | 1425 | CG6675-RB | 153..1214 | 9..1058 | 4930 | 98.4 | Plus |
| CG6675-RC | 1413 | CG6675-RC | 153..1202 | 9..1058 | 4740 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:42:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 22109221..22110176 | 53..1005 | 4520 | 99.4 | Plus |
| 2L | 23513712 | 2L | 22109116..22109162 | 9..55 | 235 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:42:34 has no hits.
FMO13230.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:57:49 Download gff for
FMO13230.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6675-RB | 153..1179 | 9..1027 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:05:53 Download gff for
FMO13230.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6675-RB | 153..1179 | 9..1027 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:25:50 Download gff for
FMO13230.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6675-RB | 153..1179 | 9..1027 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:25:50 Download gff for
FMO13230.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 22109116..22109161 | 9..54 | 100 | -> | Plus |
| 2L | 22109223..22110203 | 55..1027 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:05:53 Download gff for
FMO13230.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 22109116..22109161 | 9..54 | 100 | -> | Plus |
| arm_2L | 22109223..22110203 | 55..1027 | 98 | | Plus |
