FMO13231.5prime Sequence
1107 bp (1027 high quality bases) assembled on 2013-02-11
> FMO13231.5prime
CAGTCGACATGTCGAATACTTCAGTTCGCCCGATTCCAACGTTAAAGGGC
ATCTTTTCGGTGCCGCGCGTCACACAGTCCCGAAACTTCCTCAAGGAAAA
CAAGGTGAGCCTGCGCTCGCTGGAAAAGTCCACCAGCCAGAAGTTGGCCG
CTAAGGAGCCGACGCGCCCGAAATGGATGCCCCCGCTGCGACGCTCTTCC
TCCGTGATGGGAGACTCAAAGGCGGAGAAACCAGCAGCTAAGGGCAAAAC
TATAAAACAGAACTCGTTGCAAAATGGCCGCAGCACCTCTCGCTCACAGC
ACCAACTGGCCGTGGCCGTTCCGGCGGAGGGGGAACGCTTCGATGGCCTG
GAGGAGCGCAATCCCATCTTATATGACCCGTCGGAGAACTTAGAATCCGA
GAATCTCCAAGAGCCTTCGTCGGATACAGACATTGATCGCTGTCAATCGT
GTGGCACGAATCGGAGCTCCACCAGCATAGCCATCCAAACTGAGGACATT
ACCGACGAACTCTATCTAACAAATGCTCTGAAGAAATGTAACTTTGATGC
CAGATCTATACTGGAGGAATCCGGTGCAAAATACGGGGAAAACTACAAAC
CCATGCAATATGAAAACGAGGAAGATTTGGAACAGTTGCCGCTTTCGGCG
CGTTCGAACTCCTCGAAGCAGAGTCGCTTCAACATGTCCGAAATGGAGGC
TATGCCCATGACCGAGGCCGAACCTGCAAACTACGGCGCCTCAGACGACG
AGGCTCCACTCAGTGCCCGTAGTCGTTTCACAACGGCCTCCAATGTCACC
ACCATAAGCTCTAAGTCAAAGCGTCGTGAGCATAAACTAGGATCCCGAGA
TGAGGTGCGCTTGCCGCGTTACCTGAAAAGCAGAGCGCGAGAAGGCGTGG
CCCAGCAGCTTGCGGAATCGCTGGATCCGACTGTCCGCGTGCCATGTGTT
GCTCAGCGATCAGACCGACTGACGCACTCACTAATGCTAAGAAACGCTAC
GAACAGCTGGTTAATGACTGAACCACATGCCCATGACTGCACAGACGTTG
AGGGGTGCGCCACCGCAAGCGGGAAATCGACAAGGGCTGACCACGTGAGA
AGGACTT
FMO13231.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:42:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11125-RC | 2177 | CG11125-RC | 180..1275 | 7..1094 | 5145 | 98.5 | Plus |
| CG11125-RA | 1597 | CG11125-RA | 180..1275 | 7..1094 | 5145 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:42:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7447787..7448265 | 67..545 | 2335 | 99.2 | Plus |
| 2R | 25286936 | 2R | 7448312..7448619 | 536..843 | 1540 | 100 | Plus |
| 2R | 25286936 | 2R | 7448783..7448942 | 844..996 | 435 | 95 | Plus |
| 2R | 25286936 | 2R | 7447652..7447712 | 7..67 | 305 | 100 | Plus |
| 2R | 25286936 | 2R | 7448994..7449083 | 996..1085 | 295 | 93.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:42:40 has no hits.
FMO13231.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:57:50 Download gff for
FMO13231.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11125-RA | 166..1282 | 1..1105 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:05:58 Download gff for
FMO13231.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11125-RA | 172..1288 | 1..1105 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:25:53 Download gff for
FMO13231.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11125-RA | 172..1288 | 1..1105 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:25:53 Download gff for
FMO13231.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7447644..7447711 | 1..66 | 94 | -> | Plus |
| 2R | 7447787..7448255 | 67..535 | 99 | -> | Plus |
| 2R | 7448312..7448619 | 536..843 | 100 | -> | Plus |
| 2R | 7448783..7448941 | 844..995 | 94 | -> | Plus |
| 2R | 7448994..7449106 | 996..1105 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:05:58 Download gff for
FMO13231.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3335149..3335216 | 1..66 | 94 | -> | Plus |
| arm_2R | 3335292..3335760 | 67..535 | 99 | -> | Plus |
| arm_2R | 3335817..3336124 | 536..843 | 100 | -> | Plus |
| arm_2R | 3336288..3336446 | 844..995 | 94 | -> | Plus |
| arm_2R | 3336499..3336611 | 996..1105 | 91 | | Plus |
