FMO13232.5prime Sequence
1148 bp (1022 high quality bases) assembled on 2013-02-11
> FMO13232.5prime
CAGTCGACATGCCACAGTCAGAGGGCGGCTATGTATCGCTGCCGGCCGTC
AATGGCAATGGCGGCGCCATCTATCAGTCGACCACAGAGCCCACGGCCCC
GCCCTCCGTTTTTGCGAGCGTGAAGCGGGCCATTGGCCAGGCCATCAAGT
CCTCGCCCACCGACAGCGAGGAGCTGCTCCGGTCGGACCGCCTGCCGGTC
ATCGTCGGCGGCTCCAGCACCATGCCCGTTGATCCCATGGATGACATCGA
ACTGCGCTCCGTGCAGCTGCAATTCCCCAATGCCCGCGGCTCCATCCTGG
AGGCCTGCGAACAGCGACGCGTGCCCACAGACAAGGGCGATGTCCACGTG
GCCATACAGGGCGATACGGCCAAGCCGGCCATTATCACCTACCACGATTT
GGGCCTCAACTACGCCACCAGCTTTGCTGGCTTCTTCAATTTTCCAGTGA
TGCGAGGTTTGCTGGAGAACTTCTGTGTTTACCATGTGACTGCTCCTGGC
CAGGAGGAGGGTGCACCCACTTTGCCAGAGGATTACGTGTATCCGACCAT
GGATGATCTGGCCGCCCAGCTGCTTTTCGTGCTATCCCACTTTGGCCTGA
AGTCGGTGATTGGTTTCGGCGTTGGGGCCGGGGCGAATATTCTGGCCCGT
TTCGCTCACGCCCATCCGGACAAGGTGGGCGCCCTGTGCCTGATCAATTG
CGTGTCCACGCAGTCGGGCTGGATCGAGTGGGGCTACCAGAGCTTCAATG
CCCGCTTCTTGCGCACCAAGGGCATGACACAGGGCGTGATCGATTATCTG
ATGTGGCACCACTTTGGACGCAATCCGGAGGAGCGCAATCACGACCTGAT
GCAGATGTACAAGCAGCACTTCGAGCGTGGCGTTAATCCGACCAATCTTG
CCATGCTGATCAACGCGTACATCCATCGCACGACCTGCATCTGGCGCGCA
CTCCGCCAGGACTCCGGGCAGCGAAACGGCGCCACCACGCTGAGATGCCG
GTGATCAATATTTACGGTTCGGCTCCTCGCCGCACGTCGACGAACCCGGT
GACTTCCAATGGCCGTTCTAGATCTACAAACTCATCGTGGAAGAAAGATT
TCCGATGGCTTGGGTGCTGGAGAAAACCGCTAGCTGGCGAAGCTTTCG
FMO13232.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:42:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MESK2-RK | 2109 | CG15669-RK | 602..1718 | 8..1122 | 5040 | 97.4 | Plus |
| MESK2-RJ | 2702 | CG15669-RJ | 381..1290 | 215..1122 | 4005 | 96.8 | Plus |
| MESK2-RC | 2193 | CG15669-RC | 895..1802 | 217..1122 | 3995 | 96.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:42:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21511404..21511967 | 533..1095 | 2170 | 95.4 | Plus |
| 2R | 25286936 | 2R | 21507513..21507722 | 8..217 | 1050 | 100 | Plus |
| 2R | 25286936 | 2R | 21510865..21511060 | 216..411 | 980 | 100 | Plus |
| 2R | 25286936 | 2R | 21511123..21511243 | 412..532 | 575 | 98.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:42:46 has no hits.
FMO13232.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:57:51 Download gff for
FMO13232.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MESK2-RK | 613..1729 | 8..1122 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:06:02 Download gff for
FMO13232.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MESK2-RK | 602..1718 | 8..1122 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:25:55 Download gff for
FMO13232.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MESK2-RK | 602..1718 | 8..1122 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:25:55 Download gff for
FMO13232.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21507513..21507722 | 8..217 | 100 | -> | Plus |
| 2R | 21510867..21511060 | 218..411 | 100 | -> | Plus |
| 2R | 21511123..21511243 | 412..532 | 98 | -> | Plus |
| 2R | 21511404..21511963 | 533..1091 | 96 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:06:02 Download gff for
FMO13232.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17395018..17395227 | 8..217 | 100 | -> | Plus |
| arm_2R | 17398372..17398565 | 218..411 | 100 | -> | Plus |
| arm_2R | 17398628..17398748 | 412..532 | 98 | -> | Plus |
| arm_2R | 17398909..17399468 | 533..1091 | 96 | == | Plus |
