FMO13233.5prime Sequence
773 bp (773 high quality bases) assembled on 2013-02-11
> FMO13233.5prime
CAGTCGACATGGTGGTTACTCGCAGTGCAGCTACGAAGAAGCAGAACCAA
GTGCTGACCTTATCTGACCAGAACATCCTAGCAGAATCTTCGAGGACCAA
AGGACCTCCTGTGCCCAAGAAGAATGTTAAGAAATTGCCGACTGCACGTC
AGTGTGTCAAGGTGGCTGCAAATCTTCTAGACGCACAAGAACCTAACGAA
AATGAAAACACAGGAACCCAAAGGAAGGATGGAAAGCAACTGGATTCCAA
ATTGAGTTCCACAGTCCAAAATACAGAAGCAGCGAGGTCCAAAGAAACTC
CTGCACCCAAGAAGAATGTTAAGAAACTGCAGGCTGCACTTCCGTGCGCC
GACGCGGCTGCAAATCTTTTGGAGGAACAAGCATCTAATGAAATGAATGA
AGAAGGACCTCCTGTGCCCAAGAAAAATGTGAAGAAACTTCCGGCTGCAC
GTCAGTGTGTCAAGGTGGCTGCAAATCTTCTAGACGCACAAGAATCTATC
GAAAATGAAAAAACAGGAACAAAAAGGAAGGATGGGAAGCAACTGCAGGC
ACAAAATTCGAATGAAAATGAAAAAACAAGCACATTAAAGAAGGATAAAA
AACTACTGGCTTCCAAAACTCCAGAAGCAGCGACAAACGATAATGCAAAT
CCAAATATGAAACCAAGCCTAAAGAAGTCGACAAGGGAGCACAAGTCCAA
AAAGTGTAATGACATTCAAAAAGCTGGAAAAGATCACATCGAACATCAAG
CCGAAGCAAGCTTTCTAGACCAT
FMO13233.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:42:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31406-RB | 1010 | CG31406-RB | 160..906 | 9..755 | 3735 | 100 | Plus |
| CG31406-RA | 636 | CG31406-RA | 180..532 | 403..755 | 1660 | 98 | Plus |
| CG31406-RA | 636 | CG31406-RA | 89..322 | 9..242 | 1110 | 98.3 | Plus |
| CG31406-RB | 1010 | CG31406-RB | 251..393 | 403..545 | 550 | 92.3 | Plus |
| CG31406-RB | 1010 | CG31406-RB | 554..696 | 100..242 | 550 | 92.3 | Plus |
| CG31406-RB | 1010 | CG31406-RB | 242..352 | 283..393 | 225 | 80.2 | Plus |
| CG31406-RB | 1010 | CG31406-RB | 434..544 | 91..201 | 225 | 80.2 | Plus |
| CG31406-RA | 636 | CG31406-RA | 171..281 | 283..393 | 225 | 80.2 | Plus |
| CG31406-RB | 1010 | CG31406-RB | 449..538 | 409..498 | 180 | 80 | Plus |
| CG31406-RB | 1010 | CG31406-RB | 560..649 | 298..387 | 180 | 80 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:42:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10349180..10349482 | 207..509 | 1515 | 100 | Plus |
| 3R | 32079331 | 3R | 10348920..10349117 | 9..206 | 990 | 100 | Plus |
| 3R | 32079331 | 3R | 10349796..10349906 | 645..755 | 555 | 100 | Plus |
| 3R | 32079331 | 3R | 10349011..10349117 | 403..509 | 430 | 93.5 | Plus |
| 3R | 32079331 | 3R | 10349376..10349482 | 100..206 | 430 | 93.5 | Plus |
| 3R | 32079331 | 3R | 10349668..10349744 | 573..649 | 370 | 98.7 | Plus |
| 3R | 32079331 | 3R | 10349545..10349607 | 510..572 | 315 | 100 | Plus |
| 3R | 32079331 | 3R | 10349002..10349112 | 283..393 | 225 | 80.2 | Plus |
| 3R | 32079331 | 3R | 10349256..10349366 | 91..201 | 225 | 80.2 | Plus |
| 3R | 32079331 | 3R | 10349271..10349360 | 409..498 | 180 | 80 | Plus |
| 3R | 32079331 | 3R | 10349382..10349471 | 298..387 | 180 | 80 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:42:56 has no hits.
FMO13233.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:57:52 Download gff for
FMO13233.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31406-RB | 89..841 | 9..764 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:06:10 Download gff for
FMO13233.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31406-RB | 160..912 | 9..764 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:26:01 Download gff for
FMO13233.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31406-RB | 160..912 | 9..764 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:26:01 Download gff for
FMO13233.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10348920..10349117 | 9..206 | 100 | -> | Plus |
| 3R | 10349180..10349482 | 207..509 | 100 | -> | Plus |
| 3R | 10349545..10349607 | 510..572 | 100 | -> | Plus |
| 3R | 10349668..10349739 | 573..644 | 100 | -> | Plus |
| 3R | 10349796..10349912 | 645..764 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:06:10 Download gff for
FMO13233.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6174642..6174839 | 9..206 | 100 | -> | Plus |
| arm_3R | 6174902..6175204 | 207..509 | 100 | -> | Plus |
| arm_3R | 6175267..6175329 | 510..572 | 100 | -> | Plus |
| arm_3R | 6175390..6175461 | 573..644 | 100 | -> | Plus |
| arm_3R | 6175518..6175634 | 645..764 | 96 | | Plus |
