FMO13238.5prime Sequence
1149 bp (1043 high quality bases) assembled on 2013-02-11
> FMO13238.5prime
CAGTCGACATGGACGAAGCCAACAAGGAGGATGTGAAGCGAGCCTCTCTT
TCCAACAGCACGGTGACGATAAGGCCGCGCCTGATCTACGGACTGCGGTC
GGATGTCATTGGCAACATCCACTTCAACCTGACCAAGGAGGTCATCTATC
CGGTGGAGGGAGTTCTAGCGTTCCACGACTACGTCCAAAACAAGCAAAGG
TTTCTCAGGCTGCCGGAGGATACGCGACCCGAGGTGATATCCATAAGTTC
GCATCGCAAACTACTGGCGGTGGTGGAAAGGCACTCGAAAAATGGTCGGT
ATATATCCATTTATGAGTTGGCCACCCTGAAGAAGCGACGTCACTTGGAG
CTGCCGAGCAACCATCGCAATGCGGAGATACAGCAGATGATCTTTACCAA
TGACTCCAGATCGGTGGCCCTGATCACCCGCCCGCCGGAGGAAACCCTTA
TTATGTTGGTGCTGGACAAGACAAGCACAGTGATCGAGGGCAGGGCCACA
ATCCCGGGATCTCATGGAGGCGCCGAGTGCATCGCTGGCAATCCAAACGA
TTGCAATTTTATGGCGGTCGGAGGCGAGCGCACGTTGTTGCTGATGAGTA
AATCGGAGCGAGGGTTTAGTATCAGCAATAATCTGAAGGTGAAATATAGG
GTCACCTCGATGGCTTTTCTATCGCTGGACCTGCTGATGATTGGTACATC
GGATGATCAGTTGATCCTGGTGGAGAACGGCGAGCAGAAGTTGGCTCAAA
AGGCGAGCGATGCGGACACTGTGGACTTGATGATCGATCAGGAGGTGTTC
GATCGGGACAAGGAGTTGCAGGAACAGCGTTTCCTGCCCACGCAGCGGTT
AGCCTTCCTGACAGGAGAGTCCTCTGCATGACCGCCTTCCCCAAGGGATT
CGCCTACATCATCTTCAATCGGGTCTTCGTCTTCGAGCGCGTTTCCAGTT
CAAGTTCGAGAGAAAACCATCCTACGTGCCCACGATCTGTATGCCGAGCA
TATGTACCGATTCTAATTCTGGCCATCGACCACAAACAGAAACGTGATAG
TGACCACATTCCATGTCGATTTTGTGGATTCTCATGTCCCGAACCTGAAA
ACAAGCAGCTGAGTGGACGCCTGGATCCATCCAACTGTAGAATCTCGCC
FMO13238.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:23:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4329-RA | 3781 | CG4329-RA | 157..1279 | 9..1112 | 4955 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:23:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22612010..22612790 | 1064..293 | 3360 | 97.4 | Minus |
| 2R | 25286936 | 2R | 22613020..22613220 | 209..9 | 930 | 97.5 | Minus |
| 2R | 25286936 | 2R | 22612879..22612965 | 292..206 | 435 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:23:09 has no hits.
FMO13238.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:54:20 Download gff for
FMO13238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4329-RA | 108..1196 | 1..1077 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:53:31 Download gff for
FMO13238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4329-RA | 149..1237 | 1..1077 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:15:22 Download gff for
FMO13238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4329-RA | 149..1237 | 1..1077 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:15:22 Download gff for
FMO13238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22611994..22612790 | 293..1077 | 97 | <- | Minus |
| 2R | 22612879..22612962 | 209..292 | 100 | <- | Minus |
| 2R | 22613021..22613228 | 1..208 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:53:31 Download gff for
FMO13238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18499499..18500295 | 293..1077 | 97 | <- | Minus |
| arm_2R | 18500384..18500467 | 209..292 | 100 | <- | Minus |
| arm_2R | 18500526..18500733 | 1..208 | 95 | | Minus |
