FMO13239.5prime Sequence
1123 bp (1043 high quality bases) assembled on 2013-02-11
> FMO13239.5prime
CAGTCGACATGGCGGTCAAGGTGCAATTCGAAATTGGCCACACGTCGAAG
CTGCGCAGCAAGAAGACACCGCATCCGCAGGCCTTTACGCACGACTGGGA
GATCTACGTTCAGGGCGTGAACAAGGCGGACATCAGTGCTTTTGTGGAGA
AGGTGGTCTTTGTGCTGCACGAATCCTTTCCGAAACCCAAACGAGTGGTC
AAGGAACCGCCGTATGCCATTCAGGAGTCCGGCTACGCTGGCTTCCTACT
GCCTGTTGAGATTTACTTTCGCAACCGAGACGAACCCAAGCGCATTGTTT
ACCAGTACGACCTGGTACTGCAGTCCACGGGTCCACCGCAGCACCACGTC
GAGGTAAAGACGCACATTTTCGAGGCGCCGTCGGAGGAGTTTCGCACGAA
ACTTATGCGAGGCGGTGGAGTGCCAGTGTTCGGAGCTAACATCGGTGCCG
GCAGTCTCGCCCGAACGCTTTCGCCCAGTGTTGGCAGCGGTGAGACAGCG
CACAGTAATGAGATGTCTGGTGTCAAAGCCAAAGGCGTACCAGGTACAAT
ATCCATGAACTCGGATTTAAACACCGGCAAGAAACACAAGTCGCGCAGCG
AGGATCCCGGAAAGAGCAATGCCTTCTCTGCCCTCTTCGGTCCGCCTATC
ACGAAGACCAGCGTAACGGCCAACAACATGGCCCAGGTGCCTGTCTCCAA
GCACTCTCCGGAGGCTAAAAGTGCTGCCGTTGGCGGAAAGGGTGTGTTTC
ACGAGGGCAGGGAGAAGGCGAGCAAGGATCGCGATAAGTCCAGCGGCGGA
GACAAGCCGCGGGAGAAGGACAAAAAGATCGGCATGGTCGCGACAAAGAC
CGAAAGTCCAGTAAGTCCTGCGATGGCAAGCACGAACGGGATAAGAAAAG
TCTAGAGGATAAATCACGGGACAGGAGCGTGAGCGCGAGCAGGTTCAGCA
TACCACATCTGCCACGCCCTTACGGTGCTACTTCTGTTGGCACAGCTGGA
GACTCTAAGCACACAGCAGTCCTAGCCTGAAAGCAACGAAATGGGTGCGC
CAGTCCCAGAAAGACGGCATGATCGTCGCTTGTGCGTGACTCACTTCCGT
TCATGAGTCGATGAGCAAGTTCG
FMO13239.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:23:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ear-RC | 3988 | CG4913-RC | 197..1277 | 8..1069 | 4890 | 97.9 | Plus |
| ear-RB | 3091 | CG4913-RB | 197..1277 | 8..1069 | 4890 | 97.9 | Plus |
| ear-RA | 3091 | CG4913-RA | 197..1277 | 8..1069 | 4890 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:23:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15321674..15322491 | 194..1001 | 3615 | 98.4 | Plus |
| 3R | 32079331 | 3R | 15321417..15321604 | 8..195 | 940 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:23:18 has no hits.
FMO13239.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:54:21 Download gff for
FMO13239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ear-RA | 187..1274 | 1..1073 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:53:36 Download gff for
FMO13239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ear-RA | 193..1280 | 1..1073 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:15:25 Download gff for
FMO13239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ear-RA | 193..1280 | 1..1073 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:15:25 Download gff for
FMO13239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15321413..15321604 | 1..195 | 98 | -> | Plus |
| 3R | 15321676..15322571 | 196..1073 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:53:36 Download gff for
FMO13239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11147135..11147326 | 1..195 | 98 | -> | Plus |
| arm_3R | 11147398..11148293 | 196..1073 | 97 | | Plus |
