Clone FMO13244 Report

Search the DGRC for FMO13244

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:132
Well:44
Vector:pMK33-CFH-BD
Associated Gene/Transcriptf-cup-RC
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO13244.5prime Sequence

1143 bp (1066 high quality bases) assembled on 2013-02-11

> FMO13244.5prime
CAGTCGACATGTGCGGTCCTTATCCGCGGAGGCGTCGCTACTACCAGATT
CGCGAATTCCAGATGGCCTCCTCGGCGGACGAGCTGGAAAGCGAGGATCC
GGACGATGAGCTGGAACTGGACGATTCCGAACCTCCAACCCGCGCTGAAG
ACTTGCCCAAGCGACTGTACGACATTAACGAGGCGGATGCGGACAGCAAG
GCCGTAAATCTAGAGCAGCTAACGATTAAAGAGGAGGATGCCTGGTGGAA
CCAAGTGCCATTGAACAACCTGGACCTGAGCTCAAACACCTTAACGCACA
TATCGCCAAAGATCGAGAATCTGCAATCACTTACCGTGCTTACGCTGCAC
GATAATGCTTTGGTGGAGTTACCACCGGAGATCGGCAAGCTGGAAAAGCT
AGTGCGCCTTAATGTGAGCCACAACAAACTCAGCCAGCTGCCGCGTGCGA
TGTACAGTCTACCGGAGCTGCGGCACCTCAACATCTCGTACAACGAGTTC
GTCGAACTTAATCCGGACATCAGTGACCTTCACATGCTTGAGTTTTTGGA
CGGTGGGCATAACAATATTCAATCCCTGCCCGGTGGCATTGGGTTCCTGG
TGCGTCTAACTGCGCTCTTGTTGCCCTATAATCACATCAAGGAACTGCCG
CCCGATCTTGTTAACATGCGCTCTTTGCAAAAGATTGATCTGATGCATAA
TGATCTGACCAGCTTGCCGGAGGATATGGGCCTTTTGAGAAAGCTGGATT
GCCTTTATCTGCAGCATAACGACATACTGGAACTGCCCGAGTTCGAGGGA
AACGAGGCCTTGAACGAGCTACATGCCAGCAATAATTTCATCAAGATCAT
ACCAAAAGCTATGTGTAGTAACTTGCCACACCTGAAGATACTGGATTTGC
GGGACAATAAGATCACGGAGCTGCCCGACGAGCTGTGCCTGCTGCGCAAT
CTAAACCGTCTCGATGTGTCCAATAATACGATCAGCGTGCTGCCAGTCAC
ATTGTCCTCTTGGCTCATCTGATAGCTTGCAGGTGGGAGGGAAATCCCAT
AAGAACAATCGAACGCCGACTCCCTACCGTGTGAACAACGGAGGAATTCT
TAAAGACTCGACGGAATAGGCTGTGGTGGAAGCCAAGGAAGAA

FMO13244.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:23:38
Subject Length Description Subject Range Query Range Score Percent Strand
f-cup-RI 3319 CG9611-RI 850..1980 8..1139 5225 97.8 Plus
f-cup-RE 2219 CG9611-RE 82..1212 8..1139 5225 97.8 Plus
f-cup-RC 3407 CG9611-RC 938..2068 8..1139 5225 97.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:23:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13697834..13698039 549..344 1030 100 Minus
3R 32079331 3R 13698091..13698281 344..154 955 100 Minus
3R 32079331 3R 13697012..13697229 1060..844 900 97.3 Minus
3R 32079331 3R 13697292..13697464 845..673 865 100 Minus
3R 32079331 3R 13698343..13698488 153..8 730 100 Minus
3R 32079331 3R 13697523..13697647 672..548 625 100 Minus
Blast to na_te.dros performed on 2014-11-28 18:23:37 has no hits.

FMO13244.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:54:24 Download gff for FMO13244.5prime
Subject Subject Range Query Range Percent Splice Strand
f-cup-RC 880..1996 1..1119 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:53:48 Download gff for FMO13244.5prime
Subject Subject Range Query Range Percent Splice Strand
f-cup-RC 931..2047 1..1119 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:15:39 Download gff for FMO13244.5prime
Subject Subject Range Query Range Percent Splice Strand
f-cup-RC 931..2047 1..1119 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:15:39 Download gff for FMO13244.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 13696956..13697227 846..1119 92 <- Minus
3R 13697292..13697464 673..845 100 <- Minus
3R 13697523..13697646 549..672 100 <- Minus
3R 13697835..13698038 345..548 100 <- Minus
3R 13698091..13698281 154..344 100 <- Minus
3R 13698343..13698491 1..153 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:53:48 Download gff for FMO13244.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9522678..9522949 846..1119 92 <- Minus
arm_3R 9523014..9523186 673..845 100 <- Minus
arm_3R 9523245..9523368 549..672 100 <- Minus
arm_3R 9523557..9523760 345..548 100 <- Minus
arm_3R 9523813..9524003 154..344 100 <- Minus
arm_3R 9524065..9524213 1..153 97   Minus