FMO13245.5prime Sequence
1065 bp (1024 high quality bases) assembled on 2013-02-11
> FMO13245.5prime
CAGTCGACATGTCTACGTCTACGGCGGCCGCCAATTTGCTAAAAACAGTG
GAGGAAACCTTTTCCGGTTACAATAGCGGCGATGAGCATCATCAGCCCAA
AGAGCGATTGATTCCAGTGGAAGAGTGGCAGCGACGTGATCTGGAGTTCG
CCAAATGTATGGAACAGCGCGGCTACGAACTTAAGCCTGTCGAGGAGGAT
GGCGCCTGCCTGTTTCGCTCTATATCCCTTCAAATATACGGCGACGAGGA
GATGCACGACGTGATCCGCCAACACACTATGGATTATATACACGAGAATC
GGGAATATTTCGGTCAGTTTGTCACCGAGGACATCAACAGCTATATACAG
CGTAAACGGGCTCGTGATGCTCATGGCAACCACATTGAGATCCAAGCTAT
TTCCGAGATCTACAGCCGTACCGTCGAGGTATACTGCTACCAGTCAAATC
CCATCAATATATTTAACTCGGAACAGTCGCAGGCGGGTTATCCCCCGCTG
CGTTTATCCTATCAGCGCGGATCACACTACAATGCTATTCTGGATCCCTA
CAACGCCACCGTTGGCGTGGGCCTGGGCTTGGCTGGATACAAGCCCGAGA
TCCAAACCAAAGAGGCTGTGCGTCTCAGCGAGCAGTTGGAGATCGAACAG
ACCATGTTTGAAGATAAACTAAAGACAACAGACTGGGAGGCCACTAACGA
AGCCATTGAGGAGCAAATTGCTCGCGAGTCTTACCTACAGTGGTGTCGCG
AGAATACGCAACGCTCGCGCAACAGCAATACAGCGGCAGGATCGGCCACA
TCCTCGACGGTTACCTCTGCAGAAGCGCTTACCGACTCCGATGCCTCGCC
CTCAAATACTCTGCGTGTGGGGGCACTGGCAGCAGCGGTAATCCACCTGT
GGCTTTGACCAGCGGTAGTGGTGGTGATGGCGCCGGACCCGCGTTTCGCT
GTCGCCCAAAACACTTATCAGTTTAGTCACAGCTACCGCAGAGTTACGAG
CTGGGTGCTACAATAGCGATGCAACGAACATGGAGTAGCACCAGCTCCGG
GGGGACACAGCCGTG
FMO13245.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:23:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6091-RF | 3179 | CG6091-RF | 1012..2074 | 9..1065 | 4970 | 98.4 | Plus |
| CG6091-RE | 3276 | CG6091-RE | 1109..2171 | 9..1065 | 4970 | 98.4 | Plus |
| CG6091-RD | 2167 | CG6091-RD | 353..1415 | 9..1065 | 4970 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:23:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11606663..11607085 | 1065..649 | 1545 | 95.3 | Minus |
| 3L | 28110227 | 3L | 11607652..11607933 | 290..9 | 1410 | 100 | Minus |
| 3L | 28110227 | 3L | 11607144..11607346 | 650..448 | 1015 | 100 | Minus |
| 3L | 28110227 | 3L | 11607435..11607591 | 447..291 | 785 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:23:44 has no hits.
FMO13245.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:54:26 Download gff for
FMO13245.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6091-RD | 344..1415 | 1..1065 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:53:52 Download gff for
FMO13245.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6091-RD | 344..1415 | 1..1065 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:15:44 Download gff for
FMO13245.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6091-RD | 344..1415 | 1..1065 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:15:44 Download gff for
FMO13245.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11606663..11607083 | 651..1065 | 95 | <- | Minus |
| 3L | 11607144..11607346 | 448..650 | 100 | <- | Minus |
| 3L | 11607435..11607591 | 291..447 | 100 | <- | Minus |
| 3L | 11607652..11607942 | 1..290 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:53:52 Download gff for
FMO13245.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11600535..11600691 | 291..447 | 100 | <- | Minus |
| arm_3L | 11599763..11600183 | 651..1065 | 95 | <- | Minus |
| arm_3L | 11600244..11600446 | 448..650 | 100 | <- | Minus |
| arm_3L | 11600752..11601042 | 1..290 | 98 | | Minus |
