FMO13247.5prime Sequence
762 bp (649 high quality bases) assembled on 2013-02-11
> FMO13247.5prime
CAGTCGACATGGAAAACCCAATAAACTTCAAGGATATACCCTCCGAGATG
CCGCAGCCAAAGCGCATTCAACTTGAGGGCGAGACTTCGGTGGCCGAAGC
CATAAACTTCCTGAAGACGCAATGCGATACGCGCAAGGAGCACAAGCCTG
AGGAGTTTCAGCAGGATGGACCAACCGTAGCGGACGAGTTAAACGCTCGC
CTGGCCATGGTTCATGTGCGCGAGACTCGTGCCAAACGCATTCGCCGCTT
AGTTAAGTTTTCCCCCAATGAGACGCAAGCATTGTACAGGTTCATCTGTG
TCTGTCCCCGCTACCATCCTTGCTATGTGCCCTGCCAACACACGGGACAA
ATAATCATCGACCGGGACGTGTTGTCCCGCGAGGAACACATATGTTTTCT
AGCTACACCCAAGAAGGACTTCTCCTCACCCCAGTTGGCCAAACAGGCGC
GCTACTACACCAAAAAGATCTACGTTAACCAATGTACAGCACGGGTTGAA
CGACTTGCCGATCCTCACCCAATGCGAGTGAGTGACACATACAATTTCTT
TAAAGGACTACCTCTCGCTCGTCATATAGCGGCTCTAGAGAACCAGATGA
ACCCAAACCTCCGGTAGAGCCATGTCAATGGAGAAGCGCTGGATACATGA
GGAGGAGATGGCGTCAGCGCAAGGCAGCGAGCGTGTCCAAAGCGACGATG
CAGGTCTAAAAACGATCATTTGCGCCAGCGCAGCAATGCAAAGATATTGC
GTACTGTTCAGA
FMO13247.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:43:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rcd7-RB | 1466 | CG14098-RB | 80..848 | 8..759 | 3360 | 97.3 | Plus |
| Rcd7-RA | 1827 | CG14098-RA | 441..1209 | 8..759 | 3360 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:42:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19546131..19546551 | 288..702 | 1615 | 97.6 | Plus |
| 3L | 28110227 | 3L | 19545683..19545966 | 8..291 | 1420 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:42:59 has no hits.
FMO13247.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:57:53 Download gff for
FMO13247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rcd7-RA | 437..1210 | 1..761 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:06:12 Download gff for
FMO13247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rcd7-RA | 437..1210 | 1..761 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:26:03 Download gff for
FMO13247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rcd7-RA | 437..1210 | 1..761 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:26:03 Download gff for
FMO13247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19545683..19545964 | 8..289 | 100 | -> | Plus |
| 3L | 19546133..19546620 | 290..761 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:06:12 Download gff for
FMO13247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19538783..19539064 | 8..289 | 100 | -> | Plus |
| arm_3L | 19539233..19539720 | 290..761 | 95 | | Plus |
