FMO13249.5prime Sequence
1166 bp (1057 high quality bases) assembled on 2013-02-11
> FMO13249.5prime
CAGTCGACATGGTACGCACTAAAAACCAGTCGTCCTCCTCCAGCGCCAGC
AGCAGCAGCACCAAGTCACCAATAAAGTCCAGCAGCGGGGCAGGATCATC
CGGCGGAGGACTCGGTGGTCGCCAGTCCACTCACCGCTCGTCGAGCGCCT
CAAACGTTGCTGCCGTTGTTGCCGGCGGTTCATCTGCCGCCGGTGGAGGC
TCCTCATCGAATCGCCGTAGTCCGGGCAGCTCACCCGACGGCGACGACGA
CACCACCACCACAGATGACCTGACCCCCACAACGTGCTCCCCACGCAGCG
GCCACCACCATTCGTACGGCGGCTACTCGTCCTCTGTGCACAAACAGAAC
CTCTACGTCGTCTCGTTCCCCATAATCTTTCTTTTCAACGTTCTGCGCTC
GCTGATTTATCAGCTGTTTTGTATTTTTCGCTACCTATACGGTGCGAGCA
CAAAGGTGATATACCGCCCGCACCGACGCGACTGTAATATTGAAATCGTG
GTGCAGAATTCCTCCAAGGAGCAACAGCAGTCGTTGAACCATCCTTCGGA
GCTGAACCGTGAAGGTGACGGACAGGAACAGCAGTTATCCAATCAGCCAC
AGCGTTTCAGGCCCATTCAACCGTTGGAGATGGCCGCCAATCGTCCGGGA
GGAGGGTATTCACCTGGTCCCGGCGATCCATTGCTGGCCAAGCAGAAGCA
TCACCATCGACGCGCCTTCGAGTACATCTCCAAGGCGCTCAAAATTGATG
AGGAGAACGAAGTCACAAAGAGCTGGCAATTGAGCTCTACCGAAAAGGTA
TCAAGGAGCTAGAGGATGGCATAGCTGTCGATTGCTGGAGTGGACGTGGT
GATGTGTGGGATCGGGCTCAGCGCCTGCACGACAGATGCAGACAAACCTT
TCGATGGCGCGGGATCGTCTCCATTTTCTAGCTCTGCGTGAGCAGATTTG
CAAATGCAGCGCCTCTCCTTAAAGGAGAAGCAGAAGAAGAGGCTCAAAGC
AAGCCGCAGAAGACCAGGGAGCCCATGCTGGCAGGATGACCACGACCAAT
GAAACTAAGGAGGCGCCAGCATGGCTATGGCCAAAGGCCACCACCATGTG
CCCACCATGCATCTGGGCGCAACTGAACATTGGATCACGACGTAACTTGG
GCCGTGCAAAATCCAA
FMO13249.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:24:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| spas-RB | 2791 | CG5977-RB | 295..1433 | 9..1136 | 5250 | 98.2 | Plus |
| spas-RA | 3601 | CG5977-RA | 295..1433 | 9..1136 | 5250 | 98.2 | Plus |
| spas-RD | 3743 | CG5977-RD | 295..1220 | 9..932 | 4580 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:24:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24038509..24039262 | 9..762 | 3770 | 100 | Plus |
| 3R | 32079331 | 3R | 24039595..24039765 | 762..931 | 805 | 99.4 | Plus |
| 3R | 32079331 | 3R | 24039909..24040081 | 930..1096 | 450 | 90.8 | Plus |
Blast to na_te.dros performed 2014-11-28 18:24:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TART-A | 13424 | TART-A 13424bp | 8621..8655 | 28..62 | 112 | 80 | Plus |
FMO13249.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:54:29 Download gff for
FMO13249.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spas-RA | 287..1415 | 1..1122 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:54:03 Download gff for
FMO13249.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spas-RA | 290..1418 | 1..1122 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:15:56 Download gff for
FMO13249.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spas-RA | 290..1418 | 1..1122 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:15:56 Download gff for
FMO13249.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24038504..24039262 | 1..761 | 99 | -> | Plus |
| 3R | 24039595..24039765 | 762..931 | 99 | -> | Plus |
| 3R | 24039911..24040083 | 932..1099 | 93 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:54:03 Download gff for
FMO13249.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19864226..19864984 | 1..761 | 99 | -> | Plus |
| arm_3R | 19865317..19865487 | 762..931 | 99 | -> | Plus |
| arm_3R | 19865633..19865805 | 932..1099 | 93 | -> | Plus |
