Clone FMO13252 Report

Search the DGRC for FMO13252

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:132
Well:52
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG13581-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO13252.5prime Sequence

650 bp (650 high quality bases) assembled on 2013-02-11

> FMO13252.5prime
CAGTCGACATGCAGCGACTAGCTTCAGTTAATTCAAGAAATATAAGGCCA
TCTATTTCCGCGTTGCACACGGAGAAGCCCCACAATGTGGCCAAGACTTC
TCCAGCTTCTTCTAATCTATCAGATCATACAATTCCCGAGAAGACAGCGC
AGAAATCGGAATCGAAACCGAAAACGAAATCAACTCAAAATCAAAGTGCA
GGACTAGCGAGTGCTAAGTCACAACTGGTGATAAAGTCCAGTGTGGGTGC
TACTCCCAGGCCAGGATCAACGCCAGGCTCTGGAGCCACTAAGAACACTG
CCTCCAGTAGGACCCAGCACTTTTGCATTCCCGTGCGGAGCTGTTATACT
GTGACCAGCCGCACTCGCCGCTCCTCCGAGCACGCGGCCTTCCTGTACCA
TCTGTCCCAGTTGGAGCAGACCGGATTTGGCAAGAGTGCGGTGGATCCCA
TGAAGGCCGTGCCGGCGGCGGAGCTGCAACTGCTGCAGAGTGGCCAGAGG
ACCACCTACCTGGAGCGGCGGTACGAACGCAGCCCAGACGACAAGTACAA
CTATCCGGAGGCCACCAGCTGGCGATATGGGTGGTTCCACCGCGAGTCAG
ATCTCCTGCAGAAGCGCGTGCCCAGGCGAGATGCAAGCTTTCTAGACCAT

FMO13252.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:24:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG13581-RA 837 CG13581-RA 94..717 9..632 3060 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:24:19
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24506963..24507586 9..632 3060 99.4 Plus
Blast to na_te.dros performed on 2014-11-28 18:24:20 has no hits.

FMO13252.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:54:33 Download gff for FMO13252.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13581-RA 85..712 2..632 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:54:17 Download gff for FMO13252.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13581-RA 90..717 2..632 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:16:06 Download gff for FMO13252.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13581-RA 90..717 2..632 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:16:06 Download gff for FMO13252.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 24506959..24507586 2..632 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:54:17 Download gff for FMO13252.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20394482..20395109 2..632 98   Plus