FMO13253.5prime Sequence
620 bp (620 high quality bases) assembled on 2013-02-11
> FMO13253.5prime
CAGTCGACATGGCCGTCCTGTACCTGCTGGGATGGGTTTCGCTGGCCATA
CAGATCGTGTTCCTCACCCTGTCGATTGTGGCTGGTCTCTATTATCTGGC
GGAGCTGGCCGAGGAGTACACGACGGCGGCTAGGAAGTGCATCCTATTTC
TGATCAGCTTCACGATCTTCGTCTACATCCTGCTGCTGCTGTTCGAGGAC
CTGCCGTGGAGCCTTATCATCTGCGGACTGGTGGCGCAGGGCTTCCACCT
GGGCATCATGAGTGGATTCCCCTTCGTGCGCCTGCTCTCGCTGCCGCTGC
TGGGCTCCCTGGCCATGCTGGTGGTCAATCACTTCCTGGCCTTCCAGCAT
TTCGTCACTGTCTATGTGCCTTTCACGCAGGTGCTGGCTTATTTTACCAT
CTGCATGTGGATCGTGCCCTTCGCCCTGTTCGTCTCGCTGAGTGCGAATG
ACAGTGTCCTGCCCACCACCGTCAGCGACCAGAGCCGGCGCAGTCCGGAC
GTGGTCAGCAACTACTTCTCGCGCAACAAGAAGCAGGGCCTGCTGTCGCT
GTTCCAGTATCTGAAAGAGGCCCTGCTCCCTGGGCGGACCAAGAAGGCCT
TCGCAAGCTTTCTAGACCAT
FMO13253.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:24:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3500-RB | 774 | CG3500-RB | 104..697 | 9..602 | 2940 | 99.7 | Plus |
| CG3500-RA | 948 | CG3500-RA | 278..871 | 9..602 | 2940 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:24:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23356853..23357158 | 383..78 | 1530 | 100 | Minus |
| 2R | 25286936 | 2R | 23356449..23356673 | 602..378 | 1095 | 99.1 | Minus |
| 2R | 25286936 | 2R | 23357219..23357288 | 78..9 | 350 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:24:26 has no hits.
FMO13253.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:54:34 Download gff for
FMO13253.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3500-RA | 272..871 | 1..602 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:54:20 Download gff for
FMO13253.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3500-RA | 272..871 | 1..602 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:16:08 Download gff for
FMO13253.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3500-RA | 272..871 | 1..602 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:16:08 Download gff for
FMO13253.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23356856..23357157 | 79..380 | 100 | <- | Minus |
| 2R | 23357219..23357294 | 1..78 | 94 | | Minus |
| 2R | 23356449..23356670 | 381..602 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:54:20 Download gff for
FMO13253.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19243972..19244193 | 381..602 | 99 | <- | Minus |
| arm_2R | 19244379..19244680 | 79..380 | 100 | <- | Minus |
| arm_2R | 19244742..19244817 | 1..78 | 94 | | Minus |
