FMO13258.5prime Sequence
1134 bp (1027 high quality bases) assembled on 2013-02-11
> FMO13258.5prime
CAGTCGACATGCTTCCAATTCGGCAGAGTTTATACCAAAGAGCTCAAACT
CGATTTACAAAATTAAGATTTCCAAGATTTTTTAGCAAAGACGATTGCAA
TGGAAAGCAAGTAAAGAAGTTGAGCTTAAAAAATGTAGATGTGGCTGGGA
AAAGGGTTTTTATGAGAGTGGACTTTAATGTACCCATGAAAGATGGCAAA
ATAACCAACAACCAACGAATTGTTTCCGCACTTCCCAGTATTAAATATGC
CTTGGACAAGAAATGTAAGTCCTTGGTTTTGGCATCCCACTTGGGGCGTC
CGGATGGCAAAAAGAACAAAAAGTTTAGCCTGGAACCCGTGGCCAAGGAG
CTGGAGAGTGTGCTGGGCCAGCCGGTTCAATTCCTGGACGACTGCGTGGG
TGATAGCACCCTGAGAGCTTTGAAGGATCCCTCCGACGGCACTGTGTTCC
TGTTGGAGAATCTTCGTTTCTATGCCGAGGAGACGGGCAGCAGCAAGGAC
GATAACAAGAAGAAGGTCAAAGCAGATCCCGCGAAGGTGAAGGAATTCCG
AGCCAAGTTGGCGCAGCTGGGCGAGATCTATGTGAACGATGCCTTTGGAA
CAGCACATCGTCCGCATAGTTCCATGATGGGCGATGGCTACAAGGTGCGA
GCGGCTGGTTTCCTGCTGGACAAGGAACTGGAGTACTTTGCCAAGGTTCT
CCACGATCCGGCCAAGCCCTTTTTGGCCATTCTGGGTGGCGCCAAGATAG
CCGATAAAATTCCACTGATAACGAACCTCCTGAACAATGTAACGGCCATG
ATCATATCCGGTGGCATGGCCTTCACCTTTCTCAAAGTGCTCAATGGCAT
GGAGATTGCAAAGTCCCTCTTCGACGAGAAGGGATCCGAGTTGGTCAACG
ACATAGTCTGCAAGCGAAGAGACGACGTGAATATACTATTTCCGATTGAC
TTTGTCATAGCCAATAGATCGACAGAGCCGGATAAGTGAACATGTGATGC
CACACAGGGCATACGGAGACATGATGGGTCTGGACCACGGCAGGCATCAG
TCGATGTTGCTGGCGCTATTGTGCATCAAACATCGTCTGACGGACCGTCA
GGCTTTTTCGAAACGAGCTATCCAGCCCGAGTTC
FMO13258.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:23:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9961-RA | 1440 | CG9961-RA | 11..1145 | 9..1121 | 5095 | 97.7 | Plus |
| CG9961-RB | 1429 | CG9961-RB | 11..1134 | 9..1121 | 4920 | 96.7 | Plus |
| Pgk-RE | 1893 | CG3127-RE | 922..1296 | 513..887 | 465 | 75.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:23:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2743761..2744542 | 1041..271 | 3365 | 97.4 | Minus |
| 2L | 23513712 | 2L | 2744767..2744924 | 166..9 | 790 | 100 | Minus |
| 2L | 23513712 | 2L | 2744602..2744714 | 277..165 | 565 | 100 | Minus |
| 2L | 23513712 | 2L | 2747535..2747909 | 887..513 | 465 | 74.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:23:50 has no hits.
FMO13258.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:54:27 Download gff for
FMO13258.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9961-RA | 11..1110 | 9..1089 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:53:56 Download gff for
FMO13258.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9961-RA | 11..1110 | 9..1089 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:15:48 Download gff for
FMO13258.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9961-RA | 11..1110 | 9..1089 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:15:48 Download gff for
FMO13258.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2743705..2744537 | 276..1089 | 97 | <- | Minus |
| 2L | 2744604..2744712 | 167..275 | 100 | <- | Minus |
| 2L | 2744767..2744924 | 9..166 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:53:56 Download gff for
FMO13258.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2744604..2744712 | 167..275 | 100 | <- | Minus |
| arm_2L | 2743705..2744537 | 276..1089 | 97 | <- | Minus |
| arm_2L | 2744767..2744924 | 9..166 | 100 | | Minus |
