FMO13263.5prime Sequence
494 bp (410 high quality bases) assembled on 2013-02-11
> FMO13263.5prime
CAGTCGACATGGAACCAGGAACCATTCCATCGCCTGTTTCAGCACCAGTT
GCTGCGCCTGTGACGCCATCAGCAGTGGCTGCCCCTGTCCAAGTAGTAAG
TCCTGCGGCAGTGGCTCCCGCACCAGCGGCACCGATTGCAGTCACTCCAG
TTGCTCCACCGCCCACCCTTGCAAGTGTGCAACCGGCAACAGTTACTATT
CCAGCTCCAGCTCCAATTGCTGCCGCATCCGTCGCTCCTGTCGCATCTGT
GGCGCCTCCAGTTGTTGCAGCTCCAACTCCGCCGGCAGCAAGTCCAGTTT
CAACACCACCCGTTGCTGTTGCTCAGATTCCGGTCGCTGTTTCAGCACCA
GTGGCACCTCCCGTTGCTGCAACACCCACTCCTGTTGCCCCAATTCCTGT
AGCTGCGCCTGTGAAAGCACCCCACCTGTTGCTGCTCTGCCCCCACTCCG
GCTGCCTGACTCCGTTGTTCGCCTGATCGCACACCACCGGGGTC
FMO13263.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:25:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpn-RA | 2787 | CG4795-RA | 187..677 | 6..488 | 2235 | 98 | Plus |
| Cpn-RB | 2853 | CG4795-RB | 187..677 | 6..488 | 2235 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:25:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12165101..12165553 | 456..6 | 2135 | 99.1 | Minus |
Blast to na_te.dros performed 2014-11-28 18:25:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6893 | 365..192 | 150 | 54 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6919 | 405..217 | 146 | 54 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6736..6899 | 370..204 | 144 | 55.1 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6796..6893 | 412..312 | 120 | 59.4 | Minus |
FMO13263.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:54:44 Download gff for
FMO13263.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpn-RB | 183..668 | 1..480 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:54:58 Download gff for
FMO13263.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpn-RB | 183..668 | 1..480 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:16:39 Download gff for
FMO13263.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpn-RB | 183..668 | 1..480 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:16:39 Download gff for
FMO13263.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12165072..12165556 | 1..480 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:54:58 Download gff for
FMO13263.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7990794..7991278 | 1..480 | 97 | | Minus |
