FMO13264.5prime Sequence
1006 bp (982 high quality bases) assembled on 2013-02-11
> FMO13264.5prime
CAGTCGACATGAGGCAACTATTCAGACGCTTGATGAACCACCAGTATTTG
ACGCAGGACCAGATCAATGGGTTCGACAACTACAAGTACAGTGCCATTGA
TACCTCACCGCTGAGTCAGTATGTGATGCATCCCTTTTGGGATTGGCTAG
TTAAGTTCTTTCCGCGCTGGTTTGCGCCCAACCTGATGACCTTTCTGGGC
TTCCTGTTCAGCGCCATGAACCTGGTGCTGCTCTCCTACTACGACTGGAA
CTTTGATGCGAGTTCCGGCGAGGAGGGCACCACCCCCATTCCGTCGTGGG
TCTGGCTCTGCACGGCCATCAACATCTTTTTAGCCTACACCCTGGACGGG
ATCGATGGCAAGCAGGCCCGCCGCATTGGATTATCTGGTCCGCTGGGCGA
GCTCTTCGATCACGGTTTGGATTCATATACCGCCATGTTGATCCCGACGT
GCCTGTACAGCATTTTTGGACGCAGTCGCGTGTATTCGGTGCGACCCATG
AGGATGTACTACGTATGCCTAACGGTCTACTTCAACTTCTTCATTTCGCA
CTGGGAGAAGTACAACACGGGCATCCTCTATCTGCCCTGGGGCTATGACC
TCAGCATGTGGGGGAGCACCGCCATGTACCTGGTCACCTGGTGGATGGGC
TTCGAGCGCTGGAAGTTCGAACTGCCGCTGGGATCCTACGGAACCCTACC
ATTGGGCAATGTCATGGAGGCAGTGCTGCATGTCAGTGCTATGGCGAATC
TTCCACTAGTCATAATTAATGTCTACAACTCTTTATGCGCATCGCACAGG
TCGTCTGTTGTCCTTTTGGGAGGCCGTTCGGCCCATGTGGCCCTTCATCA
CCTACTTCGTCATACTGCTCCGCTGGCCCTATGTATCGCGACCGACTCAT
GGAAAAGGATCCCGCGCTATCTTCTTGCTTAGCGGCACAATCTTTTCCAA
CGTCCGTTGTCGTTAAATTGCTCCCAGATGTCCCTGACCAAAGCGAGGCT
TGGCAA
FMO13264.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:25:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33116-RA | 2512 | CG33116-RA | 331..1331 | 9..1005 | 4665 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:25:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19534301..19534925 | 154..778 | 3125 | 100 | Plus |
| U | 3151297 | U | 2744410..2744695 | 154..439 | 1430 | 100 | Plus |
| 2L | 23513712 | 2L | 19534982..19535156 | 783..954 | 635 | 94.9 | Plus |
| 2L | 23513712 | 2L | 19533809..19533886 | 9..86 | 390 | 100 | Plus |
| 2L | 23513712 | 2L | 19534148..19534218 | 85..155 | 355 | 100 | Plus |
| U | 3151297 | U | 2744257..2744327 | 85..155 | 355 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:25:27 has no hits.
FMO13264.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:54:45 Download gff for
FMO13264.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33116-RA | 329..1336 | 1..1004 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:55:00 Download gff for
FMO13264.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33116-RA | 323..1330 | 1..1004 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:16:41 Download gff for
FMO13264.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33116-RA | 323..1330 | 1..1004 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:16:41 Download gff for
FMO13264.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19533801..19533886 | 1..86 | 96 | -> | Plus |
| 2L | 19534150..19534218 | 87..155 | 100 | -> | Plus |
| 2L | 19534303..19534925 | 156..778 | 100 | -> | Plus |
| 2L | 19534979..19535159 | 779..957 | 93 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:55:00 Download gff for
FMO13264.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19533801..19533886 | 1..86 | 96 | -> | Plus |
| arm_2L | 19534150..19534218 | 87..155 | 100 | -> | Plus |
| arm_2L | 19534303..19534925 | 156..778 | 100 | -> | Plus |
| arm_2L | 19534979..19535159 | 779..957 | 93 | -> | Plus |
