FMO13265.5prime Sequence
1141 bp (1046 high quality bases) assembled on 2013-02-11
> FMO13265.5prime
CAGTCGACATGTTGATCAACCGCGGCTCCCTACTCGAAGGTCGCGATGGT
TCTAAAATCACAACAGTTGTTGCAACACCCGGCCAAGGCACCGATCGCGT
ACAAGAGGTCTCCTATACAGACACAAAGGTCATCGGCAATGGCAGCTTCG
GCGTCGTGTTCCAGGCAAAGCTCTGCGATACCGGCGAACTGGTGGCAATC
AAAAAAGTTTTACAAGACAGACGATTTAAGAATCGCGAATTGCAAATAAT
GCGCAAATTGGAGCATTGTAATATTGTGAAGCTTTTGTACTTTTTCTATT
CGAGTGGTGAAAAGCGTGATGAAGTATTTTTGAATTTAGTCCTCGAATAT
ATACCAGAAACCGTATACAAAGTGGCTCGCCAATATGCCAAAACCAAGCA
AACGATACCAATCAACTTTATTCGGCTCTACATGTATCAACTGTTCAGAA
GTTTGGCCTACATCCACTCGCTGGGCATTTGCCATCGTGATATCAAGCCG
CAGAATCTTCTGCTCGATCCGGAGACGGCTGTGCTGAAGCTCTGTGACTT
TGGCAGCGCCAAACAGCTGCTGCACGGCGAGCCGAATGTATCGTATATCT
GCTCCCGGTATTACCGCGCCCCCGAGCTCATCTTTGGCGCCATCAATTAT
ACAACAAAGATCGATGTCTGGAGTGCCGGTTGCGTTTTGGCCGAACTGCT
GCTGGGCCAGCCCATCTTCCCTGGCGATTCCGGTGTGGATCAGCTCGTCG
AGGTCATCAAGGTCCTGGGCACACCGACAAGAGAACAGATACGCGAAATG
AATCCAAACTACACGGAATTCAAGTTCTCTCAGATTAAGAGTCATCCATG
GCAGAAAGTTTTCCGTATACGCACTCCTACAGAAGCTATCAACTTGGTGT
CCCTGCTGCTCGAGTATACGCCCAGTGCCAGGATCACACCGCTCAAGGCC
TGCGCACATCCGTTCTTCGATGAGCTACGCATGGAGGGTATCACACCTTG
CCCACGTCGCGATATGCCGCCGCTGTTCAACTTCCACAGAAGCATGAACT
CTCATACAGCCCAGCTTATGACCGCAGTTGTGCCAGCATTCTGCGAATGC
ATCGAACCTGGCGCCATCGACTTGTCCGAGGAACACTCCAT
FMO13265.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:25:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sgg-RG | 3174 | CG2621-RG | 685..1805 | 8..1121 | 5170 | 98.1 | Plus |
| sgg-RR | 5004 | CG5-RR | 1098..2188 | 38..1121 | 5020 | 98.1 | Plus |
| sgg-RQ | 4499 | CG5-RQ | 2300..3390 | 38..1121 | 5020 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:25:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2671307..2671545 | 425..663 | 1195 | 100 | Plus |
| X | 23542271 | X | 2671628..2671824 | 663..859 | 970 | 99.5 | Plus |
| X | 23542271 | X | 2669911..2670103 | 38..230 | 965 | 100 | Plus |
| X | 23542271 | X | 2672914..2673093 | 858..1034 | 770 | 97.8 | Plus |
| X | 23542271 | X | 2671119..2671231 | 313..425 | 565 | 100 | Plus |
| 3R | 32079331 | 3R | 31373036..31373316 | 492..772 | 490 | 78.3 | Plus |
| X | 23542271 | X | 2670172..2670257 | 229..314 | 430 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:25:34 has no hits.
FMO13265.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:54:46 Download gff for
FMO13265.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sgg-RG | 628..1714 | 1..1084 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:55:04 Download gff for
FMO13265.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sgg-RG | 678..1764 | 1..1084 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:16:44 Download gff for
FMO13265.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sgg-RG | 678..1764 | 1..1084 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:16:44 Download gff for
FMO13265.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2643694..2643732 | 1..39 | 95 | -> | Plus |
| X | 2669913..2670103 | 40..230 | 100 | -> | Plus |
| X | 2670174..2670257 | 231..314 | 100 | -> | Plus |
| X | 2671121..2671231 | 315..425 | 100 | -> | Plus |
| X | 2671308..2671545 | 426..663 | 100 | -> | Plus |
| X | 2671629..2671822 | 664..857 | 99 | -> | Plus |
| X | 2672914..2673103 | 858..1046 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:55:04 Download gff for
FMO13265.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2537727..2537765 | 1..39 | 95 | -> | Plus |
| arm_X | 2563946..2564136 | 40..230 | 100 | -> | Plus |
| arm_X | 2564207..2564290 | 231..314 | 100 | -> | Plus |
| arm_X | 2565154..2565264 | 315..425 | 100 | -> | Plus |
| arm_X | 2565341..2565578 | 426..663 | 100 | -> | Plus |
| arm_X | 2565662..2565855 | 664..857 | 99 | -> | Plus |
| arm_X | 2566947..2567136 | 858..1046 | 97 | -> | Plus |
