FMO13271.5prime Sequence
1148 bp (1037 high quality bases) assembled on 2013-02-11
> FMO13271.5prime
CAGTCGACATGCCACTTAAAGGCATCAGGGTACTCGAATTCGTGGGTTTA
GCACCAGGACCGTTTTGTGGGAAGATTCTAACCGACTTTGGGGCCACAGT
CACCCGCATCGACAAGGTGATGGAAAACCCTTTGGATGTACTGCAGCAGG
GAAAGCGCACACTTTGCCTGGATCTGAAGAACCCGAAAGGTCAGCAAGCG
GTGCAAAGGCTGGTCAAGAAGTGCGATGTGCTCATCGAACCTTTTCGACC
GGGAGTAATGGAGAAACTAAATCTGGGTCCCACCGACTTGTGCACAGCCA
ATCCCCGCCTGATTTATGCCCGCCTCACCGGCTTTGGCCAGCATGGAAGA
CTGGCGCAACGGGCGGGACACGACATCAACTACGCGGCCTTATCGGGAGT
ACTTTCCATGCTGGGCAGGCGCCACGAAAAGGTCACTGCACCCATTAATA
TTCTGGCCGATTTCGCTGGCGGCAGTTTGATGTGCGCTCTGGGAATTTGC
CTTGCCCTCTTGGAGCGCCACAGGTCGGGAAAAGGCCAAGTAGTGGATGC
CTCGATGGTCGAGGGAGCTGCCTATGTGGCCAGTTGGCTGTTTATGTCCA
GGAATCTGGTTATTTGGGGGAGGGAGCGCGGTGACAACCTCGTCGATGGT
GGATCATTCTTTTACGACACGTACGAAACCAAAGACGGTCGCTACATGTC
CGTGGGCGCCCTGGAACCGCAGTTCTTTGAGATGCTAAAACAGCGCTTGG
AACTGCCCGAAGATGTCAGTCAGTTTGGCGAGGAGCATCAGTTCGAGGAA
GAAAGCTTTTGACTGAGCTTTCCTCTCCAAGACCCAAGCTGATGGTCGCA
AATATTTGAGGATGTCGACGCCTGTGTCTATCCCGTTCTGGATTACCGCG
AGGTTCACAGACACGATCACATATACAGAGGATTCGTTCGAGGTGACTGA
GATACAGCGACGCCACGTCCTGCTCCAGTCTAAGCAGACTCCGGGAAAGT
TGCCCAGGCACTGATGGTGCGCAGTGGAGTGATGACGACTAGATCTTAAG
CCCGACCAGTTTAGATTGCTCGATCGGGAGTCCTCTCGAGAGCAGCTGCA
GCCTTCGACATCGTAGCCGCGAATGCTATCATCTAACTAGCTATCAAC
FMO13271.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:24:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9319-RB | 1335 | CG9319-RB | 146..1236 | 9..1081 | 5000 | 98.3 | Plus |
| CG9319-RA | 1261 | CG9319-RA | 72..1162 | 9..1081 | 5000 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:24:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20751055..20752017 | 1063..115 | 4110 | 98 | Minus |
| 2L | 23513712 | 2L | 20752087..20752196 | 118..9 | 550 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:24:58 has no hits.
FMO13271.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:54:40 Download gff for
FMO13271.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9319-RA | 145..1238 | 9..1084 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:54:41 Download gff for
FMO13271.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9319-RA | 72..1165 | 9..1084 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:16:26 Download gff for
FMO13271.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9319-RA | 72..1165 | 9..1084 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:16:26 Download gff for
FMO13271.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20752089..20752196 | 9..116 | 100 | | Minus |
| 2L | 20751035..20752015 | 117..1079 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:54:41 Download gff for
FMO13271.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20751035..20752015 | 117..1079 | 98 | <- | Minus |
| arm_2L | 20752089..20752196 | 9..116 | 100 | | Minus |
