FMO13274.5prime Sequence
1129 bp (1020 high quality bases) assembled on 2013-02-11
> FMO13274.5prime
CAGTCGACATGACGGAAAGCGTGGAGCTGATGAACAAGTACGGCGAGCCA
CTGCGCTACGACCGGAACTTCACGGGACCGAGGCAGAGGGATCGCAGCTG
CACGGATGTGCCCTGCCTGCTGTTATTCGTCCTCTTCCTGGGCGGATGGG
CCTTCATAGCCCAATACGCCATCAGGAACGGCGATCTCAACAAACTGCTG
GTGCCCACGGACTCCTTTAACCGAAAGTGTGGCATGGACTCCGGAGTGCT
GAACAAGAAAAACCTATTCTTTTTCGACTTGAATCAGTGCATCGATCCAC
TTGTACCCATCACTGGATGTGACACTCCACAGGTTTGTGTGGAGACTTGT
CCCCGAGAGACGTTCGTCTGGGACACTATGAAGGACAAACAAAGTTTTGC
GGAGCTGCATAGTCGCCTCATCTGCTTGTCGGAGGAGCACAAGGCGCAGA
TTCGCACCAAATCGGACATTCAGGATGCCATTAACCAGAACCAGTGCGCA
CGCTGGTACATCAAGAGTGCTCCATTCCTCAAACGATGCCTCTTCGAGTT
CTCGCAGGGCGTGTGTGATTATATTCCCTCGTTTCTGCTAAATGGGGGAA
GGTCGAGGCGGGAGCTGCATATGTTGCCCGGAAACGCCACCACAGAAGTT
CAAATGCAGGCCGATGTCATGTACCAGAAAATGACGGATGCCCAGGCTCT
CGTTGTTCCACAGGCGAATGGCAAACAGACTCCAGTGGACGAGGAACCGA
TCATCCAGTGCAAGCGCAGACTCAACGAGGCTGTCATCAAGGAGAAGATG
ATGCAGACCGATACGAGGCTGGCCAAGCTCGTTGGTAACATGGTGGCCCA
CTTCTACAATGGCACAAACGACGCCCAGCTTTTGGGAGAAAAGATTGTCG
AGGATCTTGTCAACTCCTGTCGATCGTTTTGTGCTGCTTCTGCACCCTGT
AGCCTCACTGATCTACTCGCTCTATGCGCTGCTCTCGGCTCCGATCTCTG
GTTCTCATCTCGGCGTGCTTATCGCCTTGCTGGTGGTATTAACTCTCGTA
AGAGTACATCCACTGGAGAAATACGCTTACGTCGTACACGCTGAATCTAC
TCCAGTCAAGAAATGCCTGCAAACGAACA
FMO13274.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:26:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11880-RC | 3162 | CG11880-RC | 398..1538 | 9..1123 | 4960 | 97.1 | Plus |
| CG11880-RB | 3463 | CG11880-RB | 699..1839 | 9..1123 | 4960 | 97.1 | Plus |
| CG11880-RA | 3195 | CG11880-RA | 431..1571 | 9..1123 | 4960 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:26:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29125803..29126521 | 329..1036 | 3055 | 97.9 | Plus |
| 3R | 32079331 | 3R | 29125414..29125739 | 9..334 | 1630 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:26:20 has no hits.
FMO13274.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:54:54 Download gff for
FMO13274.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11880-RA | 417..1512 | 1..1085 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:55:33 Download gff for
FMO13274.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11880-RA | 426..1521 | 1..1085 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:17:08 Download gff for
FMO13274.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11880-RA | 426..1521 | 1..1085 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:17:08 Download gff for
FMO13274.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29125409..29125737 | 1..332 | 98 | -> | Plus |
| 3R | 29125807..29126573 | 333..1085 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:55:33 Download gff for
FMO13274.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24951131..24951459 | 1..332 | 98 | -> | Plus |
| arm_3R | 24951529..24952295 | 333..1085 | 97 | | Plus |
