FMO13275.5prime Sequence
983 bp (983 high quality bases) assembled on 2013-02-11
> FMO13275.5prime
CAGTCGACATGGCGAGCAAAAGAAAGCACCAAGCATCCCAGAAAGTGAAA
GAGGAATCCTTCAAGAAACACACGCTTGACTCCGATGAAGAGGATTCTGA
CGACTACGAAAGGGAATACCTCAATGATAGCGACATTGAGGGCGGCGAGG
AGGGCGTGGCAAAAGTGGAAGACGATGTGAAGGTAACACCCTTCAATATG
AAGGAAGAACTGGAGGAGGGACACTTCGACAAAGATGGTCACTACCATTG
GAACAAGGAGACGGAAGCAAAGGACAATTGGTTGGACAACATAGACTGGG
TTAAAATTGGCACACAGAAGAACGCCTTCGACCCGGCAAAAGATGAAGAA
AACTCTTCCGATGAGGAGAAGAACGAACCCGTGGGCAAGGCCTTTAACTT
GTCCATGAACCTCATGAAAATGGTCGAGTTTATGAAACCGGGAGAGACTG
TCAAGATGACCCTGCAGCGTCTGGGTAAGCAGCGCCCCGTCCTAACAACC
CTTCAGAGGATTAAGCAGAAAAAGGCCGGCATCGTTGACCCAAAGACACA
GGAAATCTCTCAGCTCACCGAGCTGGCCAACGAGATTCTCTCGAAGACGG
GCAATATGGATATATATCAGGATACGTACGAAAGCATCAAGGCCAAGATC
GCCGATTTGCCAGGAACGAGCAAACCTAAAGTAGCCGATGATATTGATAT
GTATGCAGATGATTTCGAAACGAAAGAATTGGAGCGCTCTAAGACATCGT
CGAGTGATAGCTCCAAACCAACGACGACTACCTCAGAGGTGACCTGGGAG
TTTAAATGGTCGCATGATGAGACTGATATCCAGGGACCCTTTTCCACGGA
GAAAATGTTGAAATGGTTCCCAGGAGAACTACTTTAAAAACGGAGTCTAT
GTGCGAAAGTGCGGCGAAAACACAAATTTCTATACAGCAACCGCATAGAT
TTCGATTTGTACTTGGCAAGCTTTCTAGACCAT
FMO13275.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:26:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| holn1-RA | 1198 | CG5198-RA | 92..1048 | 9..965 | 4725 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:26:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10436507..10437166 | 306..965 | 3190 | 99.5 | Plus |
| 2L | 23513712 | 2L | 10436247..10436441 | 111..305 | 975 | 100 | Plus |
| 2L | 23513712 | 2L | 10436086..10436194 | 9..117 | 530 | 99.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:26:24 has no hits.
FMO13275.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:54:55 Download gff for
FMO13275.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5198-RA | 96..1060 | 9..974 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:55:36 Download gff for
FMO13275.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| holn1-RA | 92..1056 | 9..974 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:17:10 Download gff for
FMO13275.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| holn1-RA | 92..1056 | 9..974 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:17:10 Download gff for
FMO13275.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10436086..10436189 | 9..112 | 100 | -> | Plus |
| 2L | 10436249..10436441 | 113..305 | 100 | -> | Plus |
| 2L | 10436507..10437174 | 306..974 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:55:36 Download gff for
FMO13275.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10436086..10436189 | 9..112 | 100 | -> | Plus |
| arm_2L | 10436249..10436441 | 113..305 | 100 | -> | Plus |
| arm_2L | 10436507..10437174 | 306..974 | 98 | | Plus |
