FMO13276.5prime Sequence
1141 bp (1055 high quality bases) assembled on 2013-02-11
> FMO13276.5prime
CAGTCGACATGAAATCCACCGACAGCGCCAAGTGCCTGGGCAGCAAGTCC
TTGGCAATCTGTTGCCTGCTCCTCCACCTCCTACTCTGCATTAGACCAGC
AGTGTCGCAGACTCAAAGTCCACAGCGTTATCTGCATAATGTGGACAGCA
ATAGCAACAACAACGAACGCCTGCACCAGATACTCAAGGGATCCGGAGCA
GGATCGGGAGCCACGCAGCTCAACTGGCCACAGCCTCCGAAGCAAACTGT
CCCCAACGTCAAGACTGAGCTGGCCAAGCTAAACAACACTTACGTTTACC
AGAACGCCTGGCCGGCAAACAATGTGAAACTGGGTGCAGTGACAGCTGTA
AGTTTCGACAAGGCCGGCAACGTGGTAATCTTCCATCGCGTGAATCGCGT
CTGGGGACAGACCACATTTGATAACAGGAACCAGTACCAGGAGAAGTACC
GCGGGCCCATCAGGGAGAGCACCATCCTGGCACTGGAGCCCGCAACAGGC
AAAGTGCAATACGACTGGGGCAAGAACTTTTTTTACATGCCACATGGCCT
GACCGTGGACCCCGAAGACAACGTTTGGTTAACAGACGTCGCCATGCACC
AGGTTTTTAAGTTCCCGCCCCGTGGAGGCGATGGAAAACCAGCGTTGACT
CTGGGCGATGCCTTCCAGCCCGGTTCAGGACGCAAATTCTGCAAGCCCAC
CTCGGTGGCGGTGTTGGATAATGGGGACTTCTTCGTGGCGGATGGATACT
GCAATGCTCGCATCCTTAAGTACTCACGAAAAGGCGAATTGATCCTCTTC
TGGGGACAGAACACCTTCTCCGGCATATCCTACGACGTTGCGCCCCAGAA
CTTCTTCGCGATCCCCACGCTCTGACTCTCGTCCCGGAGTTGCAGTTACT
CTGCGCAGCTGATAGGGAGAATGGCGCGTACAGTGCTTCTCTCGAGCACG
GCACCTTTCACTCACAGTACCACAACCAGCTGATAGGGACCGCCCTCTTC
AGCATGGCTAACACCCCTGCAGCGGGTGGGCAGCTGGTCATTGTCACGGA
CCACCGCCGAATTAGGCATCCATTCCTGACATTATACAAGGGGCACAGGT
TTCTGGCTTAGCATGCCAGCAGCCACTGTGTCCTAGTTCGG
FMO13276.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:26:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pal1-RA | 2621 | CG12130-RA | 510..1651 | 9..1141 | 5185 | 97.7 | Plus |
| Pal1-RD | 2235 | CG12130-RD | 124..1265 | 9..1141 | 5185 | 97.7 | Plus |
| Pal1-RC | 1950 | CG12130-RC | 124..1265 | 9..1141 | 5185 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:26:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9961563..9962065 | 530..1028 | 2225 | 98 | Plus |
| 2R | 25286936 | 2R | 9960763..9961003 | 289..529 | 1205 | 100 | Plus |
| 2R | 25286936 | 2R | 9960523..9960703 | 108..288 | 905 | 100 | Plus |
| 2R | 25286936 | 2R | 9960201..9960302 | 9..110 | 510 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:26:27 has no hits.
FMO13276.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:54:57 Download gff for
FMO13276.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12130-RA | 505..1604 | 1..1096 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:55:38 Download gff for
FMO13276.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pal1-RC | 119..1218 | 1..1096 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:17:11 Download gff for
FMO13276.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pal1-RC | 119..1218 | 1..1096 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:17:11 Download gff for
FMO13276.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9960763..9961003 | 289..529 | 100 | -> | Plus |
| 2R | 9960526..9960703 | 111..288 | 100 | -> | Plus |
| 2R | 9960196..9960302 | 1..110 | 96 | -> | Plus |
| 2R | 9961563..9962062 | 530..1025 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:55:38 Download gff for
FMO13276.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5847701..5847807 | 1..110 | 96 | -> | Plus |
| arm_2R | 5848031..5848208 | 111..288 | 100 | -> | Plus |
| arm_2R | 5848268..5848508 | 289..529 | 100 | -> | Plus |
| arm_2R | 5849068..5849567 | 530..1025 | 98 | -> | Plus |
