FMO13289.5prime Sequence
1025 bp (1025 high quality bases) assembled on 2013-02-11
> FMO13289.5prime
CAGTCGACATGCCGTCGCCAGGACACCACACATCATTCTGCTGCTCCACG
GCAGGATTTATCGCTTGCTCAGCAATCGTTCTGCTTTGCAGTTCCGAGGT
CCTGTCTAGTTGGGAAGAGTGGTGGACATACGATGGCATATCCGGACCAA
GCTTCTGGGGCCTCATCAATCCGCAGTGGAATATGTGCAACAAAGGACGC
CGCCAATCGCCCATCGACGTGGTGCCCGACAAGTTGCTCTTCGATCCATA
TTTGCGGCCCCTGCACATTGACAAGCACAAGGTTTCCGGCACTCTGCACA
ACACGGGCCAGTCGCTGGTCTTCCGCGTGGACAAGGACACCAAGCAGCAC
GTGAACATATCCGGTGGACCGTTGGCCTACCGCTACCAGTTCGAGGAGAT
CTACATACATTATGGCACGGAGAATGTTCGCGGATCCGAGCACTTCATCC
AGGGCTATAGCTTTCCCGGCGAGATCCAAATCTATGGATTCAACAAGGAG
CTGTACCACAACATGTCCGAGGCGCAGCACAAGTCGCAGGGAATCGTTGG
ACTCTCGTTGATGGTGCAAATTGGCGAGACGCCCAATCCGGAGCTACGGA
TCATCACGAGCACCTTCAACAAGGTGTTGTATAGAGGATTCTCCACGCCC
ATCCGACACATATCCGTGAGGTCGCTGCTGCCGAACACGGATCACTACAT
CACCTATGAGGGCTCCACGACGCATCCGGGCTGCTGGGAGAGCACCGTCT
GGATCATAGTTAATAAGCCCATCTATATCACCAAACAGGAGTTGTACCAA
CTCCGACGACTGATGCAAGGCTCCGAGAGTACACCCAAAGCTCCACTAGG
TAATAATGCGCGACCAGTGCAAAGTTTACACCATAGAACCGTAAGAACGA
ACATAGATTTTAAGCGAAACAAGAATCATATGCGTGCCCCTCGATGTACA
AGATATGTACTATAGGCGAATCGATGGTCACCCGACACGGGACTTTTGAT
ACGTGCAAGCTTTCTAGACCATTCG
FMO13289.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:27:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1402-RC | 3875 | CG1402-RC | 551..1549 | 9..1004 | 4920 | 99.7 | Plus |
| CG1402-RB | 1881 | CG1402-RB | 551..1549 | 9..1004 | 4920 | 99.7 | Plus |
| CG32698-RD | 1775 | CG32698-RD | 561..742 | 108..289 | 295 | 78.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:27:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7837041..7837234 | 280..473 | 970 | 100 | Plus |
| X | 23542271 | X | 7837323..7837488 | 472..637 | 830 | 100 | Plus |
| X | 23542271 | X | 7838695..7838851 | 635..791 | 785 | 100 | Plus |
| X | 23542271 | X | 7836791..7836930 | 144..283 | 700 | 100 | Plus |
| X | 23542271 | X | 7839716..7839849 | 790..923 | 670 | 100 | Plus |
| X | 23542271 | X | 7826747..7826834 | 9..96 | 440 | 100 | Plus |
| X | 23542271 | X | 7840275..7840353 | 928..1004 | 295 | 97.5 | Plus |
| X | 23542271 | X | 7835026..7835079 | 92..145 | 255 | 98.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:27:25 has no hits.
FMO13289.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:55:07 Download gff for
FMO13289.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1402-RB | 300..1313 | 1..1011 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:56:12 Download gff for
FMO13289.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1402-RB | 544..1557 | 1..1011 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:17:39 Download gff for
FMO13289.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1402-RB | 544..1557 | 1..1011 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:17:39 Download gff for
FMO13289.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7826740..7826834 | 1..96 | 96 | -> | Plus |
| X | 7835031..7835078 | 97..144 | 100 | -> | Plus |
| X | 7836792..7836928 | 145..281 | 100 | -> | Plus |
| X | 7837043..7837234 | 282..473 | 100 | -> | Plus |
| X | 7837325..7837487 | 474..636 | 100 | -> | Plus |
| X | 7838697..7838851 | 637..791 | 100 | -> | Plus |
| X | 7839718..7839849 | 792..923 | 100 | -> | Plus |
| X | 7840270..7840361 | 924..1011 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:56:12 Download gff for
FMO13289.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7720773..7720867 | 1..96 | 96 | -> | Plus |
| arm_X | 7729064..7729111 | 97..144 | 100 | -> | Plus |
| arm_X | 7730825..7730961 | 145..281 | 100 | -> | Plus |
| arm_X | 7731076..7731267 | 282..473 | 100 | -> | Plus |
| arm_X | 7731358..7731520 | 474..636 | 100 | -> | Plus |
| arm_X | 7732730..7732884 | 637..791 | 100 | -> | Plus |
| arm_X | 7733751..7733882 | 792..923 | 100 | -> | Plus |
| arm_X | 7734303..7734394 | 924..1011 | 93 | | Plus |
