FMO13290.5prime Sequence
1180 bp (1049 high quality bases) assembled on 2013-02-11
> FMO13290.5prime
CAGTCGACATGACGTCACTGGGCGGAAGGGCGTTCTTGTGGATATATTTG
GTTTTTCTAATAGCTGAGATCTCTCATTCGGATGCAGATTCAATTGATGA
TCAGTGCAGGCACGCAGACAGCTGCGAAAGATGTTTATCCGCTCATCTGG
AATGCGCTTGGTGCACGGACAAGGAATACCAGGTGGGATATCGTTGTCTC
TCTCGCCGGCAACTACTTAACTACAACTGCAGTGAAACGGATATATACGA
GAACCAGCCGGTCCTAGATGTCCTTCAGGATAAGCCCCTAAAGGACTACG
AAACCAGTGATCAGGCTGTCCAAGTCACACCCCAGCGGGCATACCTTAAG
TTGGTCAAAGGAAACACGCAAAGAATGAAGCTGAGCTATAGAACTGCACG
CAACAATCCACTCGATTTGTACGTATTGATGGATCTAACCTGGACAATGA
GGGATGACAAGAAAACCCTGGAGGAGTTGGGAGCCCAACTCAGTCAGACT
CTTAAAAATCTAACAGGAAACTACAGATTGGGATTTGGTTCTTTCGCGGA
CAAGCCAACTCTACCCATGATTCTGCCACAGCATAGGGAAAACCCCTGTG
CTGCGGAGCGGGCCACGTGTGAACCAACCTATGGATATAGACATCAACTT
TCGCTAACCGATGATATACCAGCGTTCACCTCAGCCGTGGCGAACAGCAA
AATCACTGGAAACTTGGACAATCTCGAAGGTGGCTTGGATGCTCTAATGC
AGGTTATAGTGTGCACCAAGGAAATCGGCTGGAAGGAACAAGCTCGAAAA
GTGGTGATCTTAGTGACCGATGGCTTTATGCACTTAGCGGGGGACGGTCT
TCTAGCACGTATTATCCAGCGCAATGATAAGCAGTGTCACCTGAATAAAG
CAGTGAGTACACGGGTTCATTGAACTACGACTACCCCTCGCTGGAAGAAA
TCTATCGGAGTTGCTTCGTCGCAAGATTATGTAATCTTTGCTGTCACGAG
AGTTGTAAGTAGCTATTGGGAACTCAGTGCCCTATGAAGAAATTAGTTAC
GTGACAATCCTAACTGCTGATCCTCTAAATATAATTGCACTAATCCAAAA
GAAGCTTATGAAAAGTTGAATAAACGCCCTCAGTGCCGATACAGCTGATT
TATATTGACATGGCTTATCATATACAGGAA
FMO13290.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:27:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Itgbetanu-RB | 3076 | CG1762-RB | 102..1270 | 9..1167 | 5210 | 97.3 | Plus |
| Itgbetanu-RA | 3340 | CG1762-RA | 102..1270 | 9..1167 | 5210 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:27:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 21054992..21055743 | 359..1102 | 3175 | 96.7 | Plus |
| 2L | 23513712 | 2L | 21053456..21053645 | 172..361 | 950 | 100 | Plus |
| 2L | 23513712 | 2L | 21053134..21053221 | 9..96 | 440 | 100 | Plus |
| 2L | 23513712 | 2L | 21053284..21053362 | 96..174 | 395 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:27:32 has no hits.
FMO13290.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:55:08 Download gff for
FMO13290.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| betaInt-nu-RA | 303..1355 | 9..1053 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:56:15 Download gff for
FMO13290.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Itgbetanu-RA | 102..1154 | 9..1053 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:17:44 Download gff for
FMO13290.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Itgbetanu-RA | 102..1154 | 9..1053 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:17:44 Download gff for
FMO13290.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 21053134..21053221 | 9..96 | 100 | -> | Plus |
| 2L | 21053285..21053361 | 97..173 | 100 | -> | Plus |
| 2L | 21053458..21053644 | 174..360 | 100 | -> | Plus |
| 2L | 21054994..21055694 | 361..1053 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:56:15 Download gff for
FMO13290.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 21053134..21053221 | 9..96 | 100 | -> | Plus |
| arm_2L | 21053285..21053361 | 97..173 | 100 | -> | Plus |
| arm_2L | 21053458..21053644 | 174..360 | 100 | -> | Plus |
| arm_2L | 21054994..21055694 | 361..1053 | 98 | == | Plus |
