FMO13292.5prime Sequence
1031 bp (1020 high quality bases) assembled on 2013-02-11
> FMO13292.5prime
CAGTCGACATGTCGGTTAATACGGCTCACGCCAACAATGGCGTGCTCATC
CATGCTGGAGAGTACATACTGCTCCACAGCGACAGTGTCTCCATGGAGTT
CTCCGGTCAGGACAATCCCATCTTCAAGGGCTCCAAAGGTGGCAGGATTT
ATCTCACCTCCCACCGAATGATCTTCAATAGCAAGAAGTCCTCGGATTCG
ATGCAGTCGTTCAGTGCCCCGTTTGTTGCTCTTTCGGATGTGGAAATCGA
ACAGCCCGTTTTCGGGGCCAACTACATCAAGGGAAAGGTTCGCGCTCAGC
CAAATGGAAACTACGTGGGCGAGGTCAAGTTCAAGCTCCATTTCAAGGCA
GGCGGCGCAATTGAATACGGTCAAGCTCTACTGCGCTCCGCCAAGACGGC
GATGAACAACTACCACCGCGGTGGTCTGGCTGGTGATGATCCGCCACCAT
ATCAGCCGGCTGGATCCTGGAATGAGGCACCACCACCGGCATATCAACCA
CCACCTGGCTACTATGGCTGGCTGCCGCAACATGACGCCTTCAGCGGCCC
TGCGCCGAATACGGTCTATATGAGCGACAATCCGCCGCCGTATCCGGGTA
TCGCACCACCTGCTCACCAACCAGCACCGCAACAGCCGCAGGCACCGTCG
TCGAATGAACCCAATTGGTATGGTTTTTCAGCGCCGCCGCCGCAGCAGCA
ACAACAGCAGCCGGGCTATGGGCCACAAGGATGGGCCGGTGGCTATGTCC
AACCTCCGCCGTACGCTTCATGTGCGCCAAATTGTCCACCACAGCCGCCG
TACGCCGCTCCGGCTCAGACGTACAATGGCCCACAGCCATATGGTGGATA
CGGCAATGTTCCTGGCGGATTTAATACCCCCGGATTTCAGCAACCGAATG
GAAATCCAAATGGCTATCCAGGTGGACAACCATCACCCGGACACAGCAGC
AGAGCAGCTGGAGAGCCGCCGCATCTGGAGCCAGCTTTATGGGCTTCAGC
TTGCCCCTTGAATGCAAGCTTTCTAGACCTT
FMO13292.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:27:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Wbp2-RC | 1751 | CG11009-RC | 109..1114 | 6..1007 | 4780 | 98.6 | Plus |
| Wbp2-RB | 1758 | CG11009-RB | 109..1114 | 6..1007 | 4780 | 98.6 | Plus |
| Wbp2-RG | 1369 | CG11009-RG | 109..1114 | 6..1007 | 4780 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:27:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12851308..12851716 | 603..1007 | 1790 | 97.6 | Plus |
| 3L | 28110227 | 3L | 12850498..12850797 | 65..364 | 1500 | 100 | Plus |
| 3L | 28110227 | 3L | 12850915..12851153 | 365..603 | 1120 | 97.9 | Plus |
| 3L | 28110227 | 3L | 12850273..12850331 | 6..64 | 295 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 18:27:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 136..192 | 678..731 | 116 | 72.4 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9166..9222 | 678..731 | 116 | 72.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1031..1090 | 653..713 | 113 | 67.2 | Plus |
FMO13292.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:55:11 Download gff for
FMO13292.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11009-RA | 110..1128 | 1..1017 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:56:29 Download gff for
FMO13292.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Wbp2-RG | 110..1128 | 1..1017 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:17:54 Download gff for
FMO13292.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Wbp2-RG | 105..1123 | 1..1017 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:17:54 Download gff for
FMO13292.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12850269..12850331 | 1..64 | 95 | -> | Plus |
| 3L | 12850498..12850797 | 65..364 | 100 | -> | Plus |
| 3L | 12850915..12851153 | 365..603 | 97 | -> | Plus |
| 3L | 12851309..12851719 | 604..1010 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:56:29 Download gff for
FMO13292.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12843369..12843431 | 1..64 | 95 | -> | Plus |
| arm_3L | 12843598..12843897 | 65..364 | 100 | -> | Plus |
| arm_3L | 12844015..12844253 | 365..603 | 97 | -> | Plus |
| arm_3L | 12844409..12844819 | 604..1010 | 97 | | Plus |
