Clone FMO13294 Report

Search the DGRC for FMO13294

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:132
Well:94
Vector:pMK33-CFH-BD
Associated Gene/TranscriptUBL3-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO13294.5prime Sequence

1061 bp (1050 high quality bases) assembled on 2013-02-11

> FMO13294.5prime
CAGTCGACATGTCGGTAACATCTTCGATTGAGAAGCCAACAACCACAGCA
AGTGCAATTCAGCAACAGTATCAGCATCAGCAGCAGCAACAGCAACAGAA
GCCACAACAGCAGCAACAGCAGGATAAAAGCAGCACCATCGCAATCGCAG
CAGCAGCAGGACAGCAACAAAAGCGCAAATCCCTGAGTTCCAAGCGCTCG
TATTCGCTATCCTCGTCGAGCGCCTCCAGTTCTGGTTCCTTTGGGGCGAT
AAGGTCTGCGACATCGCCACTGGTCACCACCGCCGAGAGGGAGAAAGATA
AGGAGAAGAGCTCCTCCTCGGCCAGCAATAGCCACCATCAACATCATCAG
CTTCATCAACACCAACATCATCATCAGCAGCAGCAGTCGCAGCAGCAGCA
GCAATCCTTTTTGCCGTACTCATATTGCACCGATACCATAGCAGCAGTAC
ATCATCAACGACAGTCGTACGCGCTGGTCCAGAAGCCCCCATCGTTGCGC
TACCAGGGAAAGCCCCATCATCAGCTGAGCAACTTCTCGCCCACGATGAC
CTCCTCGGAACCCTCATCCCCATTGGCCGCCGATGGTTGCGGATCCGGAA
TCCTTAGCCCATCGGAGGTCGCCACCCATTGTTGCGCCAATGTCAAGGCC
AATATCACCACCCCATTGGCCACCACCACACAGAAAATGCACCGAACAAT
ACCATCTGATAAAATTAACCTACGCCTCATTCTTGTTAGTGGTAAAACAA
AAGAGTTTATTTTTAGCCCTTCAGATTCCGCAGGTGATATTGCACAAACA
GTATTTGATAATTGGCCAGAAGATTGGACCCACGAAACTGTGTCGAAAGC
CGAAATCTTGCGCTTAATTTATCAAGGTCGTTTTCTTCATTGCAATGTAA
CCTTAGGAGCACTGGGACTTCCATTAGCAAACGACTGTTATGCATTTAGT
GCCACGTGATATTTGCCAGAGCCCAATTCACAGATCAAAGACAAAATAGT
AAGCGTTCTGGACGATGCTGTTCGACAGTGCTCTATTTTGGCAAGCTTTT
CTTAGAACCAT

FMO13294.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:26:55
Subject Length Description Subject Range Query Range Score Percent Strand
UBL3-RC 2160 CG9038-RC 479..1524 4..1040 4995 98.9 Plus
UBL3-RB 1677 CG9038-RB 580..1625 4..1040 4995 98.9 Plus
UBL3-RA 2250 CG9038-RA 569..1614 4..1040 4995 98.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:26:53
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15851585..15852294 713..4 3535 99.9 Minus
X 23542271 X 15850548..15850712 982..821 695 97.6 Minus
X 23542271 X 15851088..15851196 822..714 545 100 Minus
Blast to na_te.dros performed 2014-11-28 18:26:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2487..2873 37..404 159 54.8 Plus

FMO13294.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:55:01 Download gff for FMO13294.5prime
Subject Subject Range Query Range Percent Splice Strand
UBL3-RA 547..1600 1..1047 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:55:52 Download gff for FMO13294.5prime
Subject Subject Range Query Range Percent Splice Strand
UBL3-RA 566..1619 1..1047 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:17:22 Download gff for FMO13294.5prime
Subject Subject Range Query Range Percent Splice Strand
UBL3-RA 566..1619 1..1047 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:17:22 Download gff for FMO13294.5prime
Subject Subject Range Query Range Percent Splice Strand
X 15850546..15850710 823..983 97 <- Minus
X 15851088..15851196 714..822 100 <- Minus
X 15851585..15852295 1..713 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:55:52 Download gff for FMO13294.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15744579..15744743 823..983 97 <- Minus
arm_X 15745121..15745229 714..822 100 <- Minus
arm_X 15745618..15746328 1..713 99   Minus