FMO13295.5prime Sequence
1080 bp (1020 high quality bases) assembled on 2013-02-11
> FMO13295.5prime
CAGTCGACATGGATATGCATGAGCTTACAGCTGTTTCCAAAATGAAAGGT
CCCTATTTTACTTCCCAGTACTTCAGTTCGCAAGAATTTCCACGTACTAA
TGGGGTAACTAGACTGCGCTTCTCTCTCAACATGCTGATACATATCAGCA
TTAGAAATTGGAGTGCTGATGAGTGCCTAATGCTCGGTCTGATGTATCTA
TTCCTAAAAGATTACAACCAATCGGAGAATTGGTTGGAATTGGCTCTATA
TCATTACGATGATAATGTCAGTCCAGAAGTTCTTAAAATTAAACTTTGGA
ACTACCCGAACCTGTTGGAATCCCTAGTGGAGGCCAACAAGGGACTTGGT
CACTATTTCGAAGCTAAAAAGTATGCGAATGAGCTGCTCTCAATCAATTT
TTTATCACACTTATATGCTGACACAACTGCCAAAGCTAAAACATTTGCAA
TCGAATCCTGCCAAACTCACAAAACCGAAGAAAGTGTTCCAGCTGCAGAA
AGAAATATGCTCAAAACGCTATAGGAGGAAATCAGGAGTTCTTGTATGTC
GCTATGTGGATTGGACACCATTCCTTAAACTGGCACCCTTAAAAATGGAG
GAGTTGTCCATGAAACCCTATATCAGTATTTTTTACGGATTCCTTGGTCA
AAAGGACATAGAAGTTTTAAAGAATGTATCCAGACCAAAACTTCAACGAA
TCGAACATTTATCAGGGAATTGCAGTTGCAAAATCGGAAATCTTTCTACT
TCTTTACATGATGTTGTACGCAAAGTAAATGAATTAATTCTTGGTATTAC
TGGATTTCCATTGAAGGGAAATCAAATGCTAGAAGTTATAAATTATGGTA
TTGCTGGGAACTACAATCCCGAAGAGCCCAAGATCCACAACAAAGCAATG
CTTTCATCTTTTTGAGCAATGCTGGAAAGGGCGGAGAGTAGTTTTCCTTC
TCGCCATTTAAAAGTCAGACCTCGAAAGGGTCATGTTAGTTTGGGAAATC
TCAATAGTCTTATTTATCATCATGTCCAATTCTAAGGAATATGTGGGTGC
TAACAAGTGTAAACGCAAGCTTTCTAGACA
FMO13295.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:27:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13380-RD | 3428 | CG13380-RD | 2299..3219 | 149..1056 | 4175 | 97.7 | Plus |
| CG13380-RB | 3231 | CG13380-RB | 2102..3022 | 149..1056 | 4175 | 97.7 | Plus |
| CG4174-RF | 3423 | CG4174-RF | 2294..3214 | 149..1056 | 4175 | 97.7 | Plus |
| CG13380-RD | 3428 | CG13380-RD | 1472..1612 | 8..148 | 705 | 100 | Plus |
| CG13380-RB | 3231 | CG13380-RB | 1472..1612 | 8..148 | 705 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:26:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18600639..18601202 | 911..348 | 2665 | 98.9 | Minus |
| 3L | 28110227 | 3L | 18601262..18601466 | 350..146 | 1025 | 100 | Minus |
| 3L | 28110227 | 3L | 18615741..18615845 | 148..44 | 525 | 100 | Minus |
| 3L | 28110227 | 3L | 18600444..18600576 | 1035..912 | 275 | 91 | Minus |
| 3L | 28110227 | 3L | 18616000..18616036 | 44..8 | 185 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:27:00 has no hits.
FMO13295.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:55:02 Download gff for
FMO13295.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13380-RB | 1455..2531 | 1..1064 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:55:56 Download gff for
FMO13295.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13380-RB | 1467..2543 | 1..1064 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:17:27 Download gff for
FMO13295.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4174-RF | 1467..1614 | 1..149 | 97 | <- | Plus |
| CG4174-RF | 2295..3224 | 150..1064 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:17:27 Download gff for
FMO13295.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18600639..18601201 | 349..911 | 98 | <- | Minus |
| 3L | 18601264..18601463 | 149..348 | 100 | <- | Minus |
| 3L | 18615741..18615844 | 45..148 | 100 | <- | Minus |
| 3L | 18616000..18616041 | 1..44 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:55:56 Download gff for
FMO13295.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18593739..18594301 | 349..911 | 98 | <- | Minus |
| arm_3L | 18594364..18594563 | 149..348 | 100 | <- | Minus |
| arm_3L | 18608841..18608944 | 45..148 | 100 | <- | Minus |
| arm_3L | 18609100..18609141 | 1..44 | 93 | | Minus |
