FMO13301.5prime Sequence
698 bp (698 high quality bases) assembled on 2013-02-11
> FMO13301.5prime
CAGTCGACATGCAGCCCGACTTTGATTTCACCGACACACCGGTCAGCACT
GGTACCACCATTATGGCAGTGGAGTTCGATGGCGGAGTGGTCATTGGAGC
CGATTCGCGCACCAGCTCGGGCGCCTATGTTGCCAATCGGGTCACCGACA
AGCTGACCCGCATCACGGACAAAGTGTACTGCTGCCGCAGTGGCTCGGCC
GCCGACACCCAGGCCATTGCCGACATTGTGGCCTACTCGCTGAACTATCA
CGAGAATCAGACCAACAAGGATGCTCTGGTGTTCGAGGCCGCCTCAGAGT
TCCGTAATTACTGCTACAGCTACCGCGAGTCCCTGCTTGCCGGCATCATT
GTGGCTGGGTGGGATGAGCAGCGCGGCGGCCAGGTGTACAGCATCCCGTT
GGGCGGCATGCTGACCCGCGAGTCCTGCACCATCGGCGGATCGGGATCTA
GTTTTATCTACGGATTTGTTAGGGAGCACTACCGCCCCAATATGGCGCTG
GAGGATTGCGTTACATTCGTCAAGAAGGCTGTCCAGCACGCTATCTACCA
CGATGGCAGCTCCGGTGGTGTGGTGCGCATTGGCATCATCACCAAGGATG
GCATCGAGCGACGCATCTTCTACAACACAGAATCGGGCGCATCGGCTGTT
TCCAGCACTCCCAGCTTCATTTCCTCGGAAGCAAGCTTTCTAGACCAT
FMO13301.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:28:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prosbeta1-RA | 852 | CG8392-RA | 92..763 | 9..680 | 3360 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:28:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16014114..16014588 | 528..54 | 2375 | 100 | Minus |
| 2R | 25286936 | 2R | 16013894..16014046 | 680..528 | 765 | 100 | Minus |
| 2R | 25286936 | 2R | 16014652..16014696 | 53..9 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:28:34 has no hits.
FMO13301.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:55:18 Download gff for
FMO13301.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosbeta1-RA | 76..759 | 1..684 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:56:51 Download gff for
FMO13301.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosbeta1-RA | 83..766 | 1..684 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:18:12 Download gff for
FMO13301.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosbeta1-RA | 83..766 | 1..684 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:18:12 Download gff for
FMO13301.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16013890..16014045 | 529..684 | 98 | <- | Minus |
| 2R | 16014114..16014588 | 54..528 | 100 | <- | Minus |
| 2R | 16014652..16014702 | 1..53 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:56:51 Download gff for
FMO13301.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11901395..11901550 | 529..684 | 98 | <- | Minus |
| arm_2R | 11901619..11902093 | 54..528 | 100 | <- | Minus |
| arm_2R | 11902157..11902207 | 1..53 | 92 | | Minus |
