FMO13305.5prime Sequence
1152 bp (1056 high quality bases) assembled on 2013-02-11
> FMO13305.5prime
CAGTCGACATGAATCTGCTGTGCTGCTGTTGTTGCAGTAACATGGCACCA
AACCAACGCGTCACACGCAAATGGGAACTGTTTGCCGGACGCAATAAATT
CTACTGCGATGGATTGCTAATGTCCGCACCGCACACAGGCGTCTTCTACT
TGACGTGCATCCTGATTACCGGCACCAGTGCGCTCTTCTTTGCCTTCGAC
TGTCCCTTTCTGGCGGACAGCATAAATCCGGCCATTCCGATTGTGGGAGC
GGTACTATACTTCTTCACGATGAGCTCCTTGCTGCGCACAACCTTCACGG
ATCCGGGCGTCATACCGCGAGCCTCCAACGATGAGGCCGCCTATATTGAA
AAGCAAATAGAGGTGCCAAACTCGCTGAACAGTCCCACATATCGACCGCC
GCCGAGGACCAAGGAGGTCCTGGTCAAAGGACAAACGGTCAAGCTGAAAT
ACTGTTTCACCTGCAAGATCTTCCGGCCGCCGAGGGCCTCGCACTGCAGC
CTGTGCGACAACTGCGTGGACCGCTTCGATCACCACTGTCCCTGGGTGGG
AAACTGCGTGGGCAAGCGGAATTATCGGTTCTTTTATTTGTTTCTAGTCT
CATTGGCATTTTTAGCTGTATTTATATTCTCGTGCTCTGTGACGCATTTA
GTTTTATTGATGAAGAAGGAGCACGAGGTCTTTAATGTAATCAAGGCGGC
GCCCTTCACTGTGATTGTTGTGTTCATTTGCTTCTTCTCGATATGGTCGG
TGATCGGCCTGGCCGGCTTCCATACCTATCTGACGACTAGCGATCAGACA
ACCAACGAGGATCTCAAGGGATCCTTCTCCTCCAAAGGCGGTCCACGCAC
CCAAAATCCCTATTCGCGGGGTAACATTTGCCTGACTGCTGTCACATCCT
GTGCGGACCCATGACGCCCTCGCTGATCGATAGACGCGGCATCGCCACCG
ACGAGTTCATCCAGCAGATGCAGCACCAGTCGAGTCCGCGGCACGCACTG
AGCGATGTGCTGAGTGCCTTCGCACAAGGTCACCCCCCTCGCAGCCCATG
ATGGGTGGTTAAGTTGGTGGGGGCAATCGGGTGGTGTCCGGCGGGCGGGA
ATCAGCATGTGGTGGGACGGGAGCCTAGGCCCCAAATCTAACGACGCAGT
TC
FMO13305.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:29:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
app-RR | 4156 | CG42318-RR | 1211..2310 | 9..1115 | 5240 | 98.7 | Plus |
app-RO | 4422 | CG42318-RO | 1592..2691 | 9..1115 | 5240 | 98.7 | Plus |
app-RM | 4537 | CG42318-RM | 1592..2691 | 9..1115 | 5240 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:29:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12215615..12215805 | 548..358 | 955 | 100 | Minus |
3L | 28110227 | 3L | 12219978..12220168 | 199..9 | 955 | 100 | Minus |
3L | 28110227 | 3L | 12216419..12216579 | 360..200 | 805 | 100 | Minus |
3L | 28110227 | 3L | 12213719..12213873 | 812..658 | 775 | 100 | Minus |
3L | 28110227 | 3L | 12213940..12214052 | 657..545 | 565 | 100 | Minus |
3L | 28110227 | 3L | 12213354..12213475 | 933..813 | 560 | 99.2 | Minus |
3L | 28110227 | 3L | 12213158..12213299 | 1075..932 | 545 | 95.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:29:01 has no hits.
FMO13305.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:55:23 Download gff for
FMO13305.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
app-RL | 1560..2636 | 5..1086 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:57:06 Download gff for
FMO13305.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
app-RM | 1590..2666 | 5..1086 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:18:27 Download gff for
FMO13305.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
app-RM | 1590..2666 | 5..1086 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:18:27 Download gff for
FMO13305.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12213173..12213297 | 934..1060 | 96 | <- | Minus |
3L | 12213354..12213475 | 813..933 | 99 | <- | Minus |
3L | 12213719..12213873 | 658..812 | 100 | <- | Minus |
3L | 12213940..12214051 | 546..657 | 100 | <- | Minus |
3L | 12215618..12215802 | 361..545 | 100 | <- | Minus |
3L | 12216419..12216579 | 200..360 | 100 | <- | Minus |
3L | 12219978..12220170 | 5..199 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:57:06 Download gff for
FMO13305.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12206273..12206397 | 934..1060 | 96 | <- | Minus |
arm_3L | 12206454..12206575 | 813..933 | 99 | <- | Minus |
arm_3L | 12206819..12206973 | 658..812 | 100 | <- | Minus |
arm_3L | 12207040..12207151 | 546..657 | 100 | <- | Minus |
arm_3L | 12208718..12208902 | 361..545 | 100 | <- | Minus |
arm_3L | 12209519..12209679 | 200..360 | 100 | <- | Minus |
arm_3L | 12213078..12213270 | 5..199 | 98 | | Minus |