Clone FMO13305 Report

Search the DGRC for FMO13305

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:133
Well:5
Vector:pMK33-CFH-BD
Associated Gene/Transcriptapp-RL
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO13305.5prime Sequence

1152 bp (1056 high quality bases) assembled on 2013-02-11

> FMO13305.5prime
CAGTCGACATGAATCTGCTGTGCTGCTGTTGTTGCAGTAACATGGCACCA
AACCAACGCGTCACACGCAAATGGGAACTGTTTGCCGGACGCAATAAATT
CTACTGCGATGGATTGCTAATGTCCGCACCGCACACAGGCGTCTTCTACT
TGACGTGCATCCTGATTACCGGCACCAGTGCGCTCTTCTTTGCCTTCGAC
TGTCCCTTTCTGGCGGACAGCATAAATCCGGCCATTCCGATTGTGGGAGC
GGTACTATACTTCTTCACGATGAGCTCCTTGCTGCGCACAACCTTCACGG
ATCCGGGCGTCATACCGCGAGCCTCCAACGATGAGGCCGCCTATATTGAA
AAGCAAATAGAGGTGCCAAACTCGCTGAACAGTCCCACATATCGACCGCC
GCCGAGGACCAAGGAGGTCCTGGTCAAAGGACAAACGGTCAAGCTGAAAT
ACTGTTTCACCTGCAAGATCTTCCGGCCGCCGAGGGCCTCGCACTGCAGC
CTGTGCGACAACTGCGTGGACCGCTTCGATCACCACTGTCCCTGGGTGGG
AAACTGCGTGGGCAAGCGGAATTATCGGTTCTTTTATTTGTTTCTAGTCT
CATTGGCATTTTTAGCTGTATTTATATTCTCGTGCTCTGTGACGCATTTA
GTTTTATTGATGAAGAAGGAGCACGAGGTCTTTAATGTAATCAAGGCGGC
GCCCTTCACTGTGATTGTTGTGTTCATTTGCTTCTTCTCGATATGGTCGG
TGATCGGCCTGGCCGGCTTCCATACCTATCTGACGACTAGCGATCAGACA
ACCAACGAGGATCTCAAGGGATCCTTCTCCTCCAAAGGCGGTCCACGCAC
CCAAAATCCCTATTCGCGGGGTAACATTTGCCTGACTGCTGTCACATCCT
GTGCGGACCCATGACGCCCTCGCTGATCGATAGACGCGGCATCGCCACCG
ACGAGTTCATCCAGCAGATGCAGCACCAGTCGAGTCCGCGGCACGCACTG
AGCGATGTGCTGAGTGCCTTCGCACAAGGTCACCCCCCTCGCAGCCCATG
ATGGGTGGTTAAGTTGGTGGGGGCAATCGGGTGGTGTCCGGCGGGCGGGA
ATCAGCATGTGGTGGGACGGGAGCCTAGGCCCCAAATCTAACGACGCAGT
TC

FMO13305.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:29:02
Subject Length Description Subject Range Query Range Score Percent Strand
app-RR 4156 CG42318-RR 1211..2310 9..1115 5240 98.7 Plus
app-RO 4422 CG42318-RO 1592..2691 9..1115 5240 98.7 Plus
app-RM 4537 CG42318-RM 1592..2691 9..1115 5240 98.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:29:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12215615..12215805 548..358 955 100 Minus
3L 28110227 3L 12219978..12220168 199..9 955 100 Minus
3L 28110227 3L 12216419..12216579 360..200 805 100 Minus
3L 28110227 3L 12213719..12213873 812..658 775 100 Minus
3L 28110227 3L 12213940..12214052 657..545 565 100 Minus
3L 28110227 3L 12213354..12213475 933..813 560 99.2 Minus
3L 28110227 3L 12213158..12213299 1075..932 545 95.1 Minus
Blast to na_te.dros performed on 2014-11-28 18:29:01 has no hits.

FMO13305.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:55:23 Download gff for FMO13305.5prime
Subject Subject Range Query Range Percent Splice Strand
app-RL 1560..2636 5..1086 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:57:06 Download gff for FMO13305.5prime
Subject Subject Range Query Range Percent Splice Strand
app-RM 1590..2666 5..1086 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:18:27 Download gff for FMO13305.5prime
Subject Subject Range Query Range Percent Splice Strand
app-RM 1590..2666 5..1086 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:18:27 Download gff for FMO13305.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 12213173..12213297 934..1060 96 <- Minus
3L 12213354..12213475 813..933 99 <- Minus
3L 12213719..12213873 658..812 100 <- Minus
3L 12213940..12214051 546..657 100 <- Minus
3L 12215618..12215802 361..545 100 <- Minus
3L 12216419..12216579 200..360 100 <- Minus
3L 12219978..12220170 5..199 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:57:06 Download gff for FMO13305.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12206273..12206397 934..1060 96 <- Minus
arm_3L 12206454..12206575 813..933 99 <- Minus
arm_3L 12206819..12206973 658..812 100 <- Minus
arm_3L 12207040..12207151 546..657 100 <- Minus
arm_3L 12208718..12208902 361..545 100 <- Minus
arm_3L 12209519..12209679 200..360 100 <- Minus
arm_3L 12213078..12213270 5..199 98   Minus