FMO13306.5prime Sequence
1159 bp (1065 high quality bases) assembled on 2013-02-11
> FMO13306.5prime
CAGTCGACATGTTTGAGCCCTATGTGAAAATCAAGAAAAAGCGAAGTGTG
AATGAAATCTATGAAAATGAGAATTTAGAGCAACAGCAACATCATCTTCA
GCAGCAGCAGCAGCAACCTGCTACCAGCGATAATTGTTGCTGCGAGAACG
GCGAGCCTCAGAATGCGCCTGAAGTTGCAACTGCAACGGTAGCGGCAACA
TCTGTGGCAGCAACATCTGCGGCAGCAACAGTCGCCACAGGAGCAGCGGC
CAGCAGTAGCAGCAGCGGCAATTGCAGTCGCCTGCAGCAATTGATATCGA
CGCCACCAGTATTATTGCGCAGATCGTCGCTGCAACAGCAGCAGCACCAG
CAACAGCAACACCACCCACACACGCCAGCAGCAACGGCAACACCACCGCA
ACAGCAGCAACAGCAGCAAGCTGCGCCTTCGGTTTTGCAACAGCATTTGG
GTCACCTGAATTACGAAAGTGGAGCAACTGCAGCAGCAGCAGCAACAGCA
GCGGCTGCAGCAGCAACAGTAGCAACCAGTAGAAGTGGCTCGGCAACACT
GGCGCAGCATTTGGCAACACCCAGCAACATACTGCAGGCGGCATTCGGCA
GCAGCAACTTGCAACACATACTAACGCGGTCCGCCCCCTCGCCCTCGTCC
AGTGCGATTTCCTCCAACAACTGCAGCAGCGCCTGTGCGGGCAATACGCA
CTACAACGGTGGCAATAGCAACAGTGGCAGTAGCAGCAGCAACAGCAATC
ACCACAGCAACAGCATCATCGCCAGCCGCCTGTTCGGAGCCGCCTCCTCC
TCATCCTCCTCGTCCTCCTCCTCCGCATCAGCATCCTCCTCGTCGTGGCT
GCCTCATCCTCTTCGTCGTCACACCATCTGCATAGCCATCATTCGGCGCT
GACCAACTCCATAACGAATCGCATCAATCAGTCCATCAGGCGGCATCTGA
ACCAGCAGCACATCACCATCCCCTCAGTGCATCCTCGTCCTCGCATCGGC
ATCTCATCTGCATCCACAATCATCATCATCCTCCTATCAGCAATCGTCGG
TACAACAGCAACATTATAATTGGGCATCTGCCAGGAGCAGCAGACACCAC
ATCACTCCAGGCAGCAGCTACCAGCAGAGCTCAGCAGCGCAGCATCATCA
TCTACTCAA
FMO13306.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:29:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rdx-RE | 4159 | CG12537-RE | 439..1595 | 9..1150 | 5250 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:29:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13981859..13982925 | 1072..9 | 5090 | 99.5 | Minus |
Blast to na_te.dros performed 2014-11-28 18:29:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2257..2895 | 138..782 | 470 | 57.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2329..2999 | 79..763 | 458 | 57.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2273..2636 | 264..629 | 364 | 60.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2381..2831 | 77..535 | 345 | 57.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2254..2829 | 185..779 | 318 | 57.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6741..7197 | 79..534 | 316 | 58.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2666 | 381..760 | 287 | 58.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2344..2658 | 473..776 | 259 | 59.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6410..6824 | 348..776 | 247 | 56.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2527 | 668..891 | 239 | 58.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6762..7094 | 79..423 | 237 | 56 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2568..2941 | 45..421 | 230 | 57.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2497..2972 | 79..528 | 225 | 56.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6783..6946 | 79..252 | 208 | 63.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2391..2505 | 665..779 | 206 | 64.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2421 | 665..776 | 200 | 64.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2336..2460 | 712..835 | 199 | 65.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6535..6959 | 372..782 | 195 | 57.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2343..2514 | 665..835 | 191 | 57.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6803 | 694..779 | 187 | 68.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1040..1151 | 668..776 | 183 | 65.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2539 | 513..768 | 173 | 58.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6764..6880 | 665..781 | 171 | 60.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1054..1163 | 661..770 | 171 | 64 | Plus |
| TART-A | 13424 | TART-A 13424bp | 11595..11722 | 215..346 | 171 | 64.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6791..6893 | 665..776 | 169 | 67 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2266..2484 | 666..890 | 165 | 57.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6782 | 715..779 | 163 | 72.3 | Plus |
| TART-A | 13424 | TART-A 13424bp | 417..544 | 215..346 | 162 | 65.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1054..1165 | 643..760 | 161 | 64.7 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3228..3350 | 125..240 | 157 | 63.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6882..7209 | 79..414 | 156 | 56.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1055..1133 | 701..779 | 152 | 65.8 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3290..3346 | 727..780 | 152 | 77.2 | Plus |
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 503..573 | 706..776 | 148 | 67.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1498..1584 | 692..779 | 139 | 66.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1042..1121 | 700..779 | 139 | 68.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6532..6569 | 727..764 | 136 | 84.2 | Plus |
| X-element | 4740 | X-element ROXELEMENT 4740bp | 1712..1829 | 39..165 | 135 | 62.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2259..2352 | 685..779 | 129 | 64.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6807..6872 | 64..128 | 129 | 68.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1530..1587 | 713..770 | 128 | 69 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1526..1587 | 700..761 | 121 | 66.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1536..1599 | 701..765 | 115 | 66.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6719..6764 | 731..779 | 112 | 73.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2946..2985 | 78..117 | 110 | 75 | Plus |
FMO13306.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:55:24 Download gff for
FMO13306.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rdx-RE | 432..1515 | 3..1081 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:57:17 Download gff for
FMO13306.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rdx-RE | 434..1517 | 3..1081 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:18:36 Download gff for
FMO13306.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rdx-RE | 434..1517 | 3..1081 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:18:36 Download gff for
FMO13306.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13981859..13982930 | 3..1072 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:57:17 Download gff for
FMO13306.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9807581..9808652 | 3..1072 | 99 | | Minus |
