FMO13308.5prime Sequence
665 bp (665 high quality bases) assembled on 2013-02-11
> FMO13308.5prime
CAGTCGACATGGCTCACTCGAACAAGGCTCGCAAAGCAGCCAAAGAGGCA
AACGCCAAGAAGTCTGCGGGATCGGGAACAGAGAGCAAACCGGAGCACGT
AAAGATACATGGCCCAGGCGATCGTAGTGCAGGAGTTCTGACTGGCGACC
AGTTCCTGGAGAGCTTGCTCCAGACTCTCTACAGGTCATGGCTTCAAATC
TGCCGCCTGGCAGATTTTGTGATGTCCGAGCTAGGTGGAAATGATTTCCT
GGAGGCCACCGCGGCCTGGTGCACCCGGAATCCGCACGTTGCTATCTGCC
TGCTAGCTGGTGGTCTTGTATTCATGCTGCCCTTCCTTATAATATTTGGG
TTTGGAATAGCCACCATGGTTATGACCTTTACAGGTTTGCTGGTGCTAGA
AGGCACACTCCTGACCATTGTGTCCATGGTGTTCTTCGCCTGCCTGGGAG
GACTAGTCATAATGGTACCTCTCTTCGGTGTCGCCGCTGTTGCTGCCTAT
TTCGGATTTGCCCAGGTGTATGGCCTATGTGATGGAATAGAGATCCATAA
GAGCGCGTGGGTCATGTTCTTTAGGGATCAACGGAAGGCCGGCGATCCGC
CGCCAGCTGCTGTGACCATAACCGATGAACCCACTTCTACGACTGCAGCA
AGCTTTCTAGACCAT
FMO13308.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:29:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32803-RA | 818 | CG32803-RA | 108..748 | 7..647 | 3205 | 100 | Plus |
| CG32803-RC | 905 | CG32803-RC | 199..835 | 11..647 | 3185 | 100 | Plus |
| CG32803-RD | 800 | CG32803-RD | 108..730 | 7..647 | 2925 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:29:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1900769..1901015 | 647..401 | 1235 | 100 | Minus |
| X | 23542271 | X | 1901064..1901277 | 403..190 | 1070 | 100 | Minus |
| X | 23542271 | X | 1901436..1901615 | 190..11 | 900 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:29:35 has no hits.
FMO13308.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:55:27 Download gff for
FMO13308.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32803-RA | 129..778 | 1..651 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:57:26 Download gff for
FMO13308.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32803-RA | 102..751 | 1..651 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:18:45 Download gff for
FMO13308.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32803-RA | 102..751 | 1..651 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:18:45 Download gff for
FMO13308.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1900765..1901013 | 403..651 | 99 | <- | Minus |
| X | 1901065..1901277 | 190..402 | 100 | <- | Minus |
| X | 1901437..1901620 | 1..189 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:57:26 Download gff for
FMO13308.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1795098..1795310 | 190..402 | 100 | <- | Minus |
| arm_X | 1795470..1795653 | 1..189 | 97 | | Minus |
| arm_X | 1794798..1795046 | 403..651 | 99 | <- | Minus |
