FMO13310.5prime Sequence
1146 bp (1057 high quality bases) assembled on 2013-02-11
> FMO13310.5prime
CAGTCGACATGGGAATCGGAATGCTTGATTCCGAAGAAAGCAGCTCCTCA
GCCCTCTCGGCCATCGCTTTGGCGGTTAGCGCCACCAGCGACGACAACTC
AAATGAGACGACCCCGTGCGCCAGTGTGTCGCGCATGGCGCACCAGCTAC
AGCACACGCAACGGCTAAGTCTGGGCTCTACGGGGGACATCACACTGGAT
AGCCCAGCTGTGGAGGATTCACTGTCGATGTCCCGTCAATCGGCCGAGAA
GCTGCAGATTCTGGCGCAGGCTAAGCGCTCGTCGTTGGGTTCTGAAGGTA
GCGGCAATTCAAACTCGCCCAGCAAACGTTTGCGCAACCCCCTGGCTGCA
GTCACCTGTAACAACCAGATTGATGGGACTGCTTCGCTCAATTTTCAGCC
ATCAACCAGCAGGTTGGCGCAAGTTCGCCAGGCAAAAAAGCCCTCGACAA
CAAATATTACAACCCGAATAGTGGCAGCGGACAGTTTCTTTGTGTTTCGC
ACCCCGGCCATGAGTGCCCACATCAACAGCGGCATAAACTACTTTGAAAG
ACTTTCAGACGAAATACTACTTGACATCTTTAAGTGGCTCCCGAAGAAGA
CGCTGCTGCGCATGGCTACCGTTTGTCGACGCTTTAACCGCTGCTCTCGC
GATGAGACTTTGTGGACAAGGCTAGATTTGGGTTTGCGGACAATTAGACC
AGGTGCCCTCGAGCAAATTGTACGGCGGGGAGTCCTTGTAATACGTCTGG
CCCAGACTAGTATCCAGGAGCCCGCATTTGCACCATATACAGAAGTGTTT
AGGACCCGATTACAATATCTTGACCTGAGTATGGCTTCCATCACCCGAAG
CTCACTGCTGACACTATTGTCCCACTGCCGCCAGCTAAAGAAAATAAGCT
TAGAGAATATTGAGCTCGATGATGACATCTGTGCAGAGATCGCAAAGATG
AAGCTTTGGAGGCGGTCATCTGACTATGGCTAGTGCCTGACGTCCAACAG
TGTTCGCCTGATGATGGAGTCACTTACCAGCTAAGCAGCTAAACATATCG
TGACTGACTATTGCGATGCTGTACGCCTTGGTTAACCACAATTCCCCACT
AAATCGACCCAATTTGCCGCTAGGCATGCACGCGCCCGGATGTGGA
FMO13310.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:28:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Skp2-RE | 1853 | CG9772-RE | 249..1348 | 9..1097 | 5165 | 98.6 | Plus |
| Skp2-RA | 2412 | CG9772-RA | 249..1348 | 9..1097 | 5165 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:28:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4336469..4337221 | 761..9 | 3765 | 100 | Minus |
| 3R | 32079331 | 3R | 4336113..4336408 | 1052..762 | 1230 | 98.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:28:15 has no hits.
FMO13310.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:55:14 Download gff for
FMO13310.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9772-RB | 312..1393 | 1..1072 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:56:40 Download gff for
FMO13310.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Skp2-RB | 312..1393 | 1..1072 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:18:02 Download gff for
FMO13310.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Skp2-RA | 240..1321 | 1..1072 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:18:02 Download gff for
FMO13310.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4336089..4336408 | 762..1072 | 96 | <- | Minus |
| 3R | 4336469..4337228 | 1..761 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:56:40 Download gff for
FMO13310.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 161811..162130 | 762..1072 | 96 | <- | Minus |
| arm_3R | 162191..162950 | 1..761 | 99 | | Minus |
