FMO13311.5prime Sequence
1120 bp (1035 high quality bases) assembled on 2013-02-11
> FMO13311.5prime
CAGTCGACATGGACGAGTCGGAGCTGCTATTCAATCTGTTTTATATTCTG
TTGTGCATGGTGATCATCTACCCGCCAGAGGAGTTCCAACGCCTGGGATT
CACCATTGAACAGTTGTTCGCTCGGTTCCTGGGAGAAGAGTACCTGGACT
TTGTAGGCTACCACCAGCGCCGTACTTCGCTGAATCTCTTCGTGCACTCC
TGTCTGCCCTTCTCCTACTTTCTTATTCATAGGCTCAAGTTCTCCGTCTT
CGCCACGCAGGAGCCCTTGGAGGACTTCGACCTGGACCCGGATTTCCCCA
TGCCCCAGGAAGCGGTAGCGTTTAAAACGCTTACGTGGAAAACCGCCCAG
CGGTTCAGTGTGTTGGCCGTTCTGGCGATGCCCGCTCTGATCTTCAACTG
GCACCAGGAAAACTGGCGTCGGCACCCGATCAGCAAGGCGCTCTCCAAGT
ACTCCATCACGCCGGGCAGCTACAGTGCCGTGGCTAGCGAAATTGGTATA
GAGTTCCGGCAACCGGAAATATACAAGAAGAAGCTAAATTCCATTAGCTC
GGTGATTGCCACGCAGAACTGGATAATAAAAACCACCATGTACAATGTTC
ACTTCGCCCATCAGAGCAACACGTCGCTTAGCGTAGCTAAGGCAGAAACT
TACAACATATCGCATCAAGACCAAAACGACACCTTGCAGATGATAAGCAT
TATTGTACGGCCAATGAGGCAGGGTGTGAGCGACTTCCACATACGAATTA
ATGCCCTGGAGTTTAGGAATCTAGAGAACCGAGTCCGACGACCAATCGCA
ATTCCCTCCAACATTCAGTTACACCGCAATGTTATAGACCGTTTTGTGGA
CGTCTTCAAGGCGCAAGTCGCCCAAAATCCCATTTTTCCAGATGATGCTA
CTACGGAAAAGTGTTTTGCCTGCATGCTAAACGAACCAAACACCAGATCC
ACAAGCAGTGTGCCGACTTTGATCGCAATGGCGCTCCCTTGGCGAACGGG
GGCGTGCTGCTCAAACTGCTACTGCCGGCCCATGTGGTGTGTAAAGTGCT
AGCGCGCCTGGCTTGCGCCTCGCAAGTGACTGGAATCGTGAAGGGTGCTG
GACAATGCACATGCCATGTG
FMO13311.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:28:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14646-RB | 1582 | CG14646-RB | 59..1157 | 7..1102 | 5205 | 98.6 | Plus |
| CG14646-RA | 1694 | CG14646-RA | 59..1157 | 7..1102 | 5205 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:28:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4390424..4391059 | 7..642 | 3180 | 100 | Plus |
| 3R | 32079331 | 3R | 4391109..4391518 | 640..1049 | 1940 | 99.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:28:22 has no hits.
FMO13311.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:55:15 Download gff for
FMO13311.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14646-RA | 46..1109 | 1..1066 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:56:43 Download gff for
FMO13311.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14646-RA | 55..1118 | 1..1066 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:18:06 Download gff for
FMO13311.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14646-RA | 55..1118 | 1..1066 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:18:06 Download gff for
FMO13311.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4391111..4391512 | 642..1043 | 99 | == | Plus |
| 3R | 4390420..4391058 | 1..641 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:56:43 Download gff for
FMO13311.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 216142..216780 | 1..641 | 99 | -> | Plus |
| arm_3R | 216833..217234 | 642..1043 | 99 | == | Plus |
