FMO13312.5prime Sequence
1045 bp (1027 high quality bases) assembled on 2013-02-11
> FMO13312.5prime
CAGTCGACATGAATAATAGCGAGGAAATCTGCACAGACAGTTTAACTTTA
CGCGGCTTTGAGGAGTACACCGTGAATGACTATAGTCTGGGTGGCATAAT
CGAGGAGAATCGCTTTTATATTGTGGCCCCAAAGGATATTGTGGTAGCTA
GTCTTATTGAAACAGATGATCGTATAGAATGGTTGATTAAACACAGTAAA
TTTGAGGAGGCAATGGAACTTATATCTGCGAATGGAGGTAACGTTCCCGT
ACTTTCCGTTGCTAAACTTTATATCAACCATTTACTGGCGCTTAAGAAGT
ATGATGACGCAGCAAAACTTTGCCTCCGCATGCTAGGCAATGACAAAGTC
CTTTGGGAAGAGGAAGTTTTTAAGTTTGTAAAGTGTCAGCAGCTACGATC
AGTTAGCGCCTATCTGCCGACTTCAGACGAATGCAAACTTGATCCCCATG
TATACGAAATGGTTTTATACGAGTTTCTCAAATTTGATGTATGTGGTTTC
CTGAATCTTATCAAGGAATGGCCATCTCATCTTTATGACGGCCTGGCTGT
TATTAACGCTATTCACGATAACTTTCGAAAGCACTATGCCAATCAGTTGC
TGGAATCATTGGCTCTTTTGTATTCCTATCAAGGCGACTTCGAAAGTGCT
CTTCGCATGTATTTAAAGTTGCAGAACAAGGATGTCTTCCAATTAATTCG
ACGGTATGAGCTTTACGATGTCATTTCAAAACTGATTATTCCACTTATTC
AATTGGATCGTGACTGCGCCTTTGAAATACTACTTGACAAGAAAAAAAAT
AAAGACTGAGATAGTTGTCCACCAGCTAGAGCACAATCAGAGTACCTGTA
CTGGTACTTAGATTCTTTACTTAAAAAGGATCCCAGTAATGTGTTTCAAA
AAAACTTATCTCTTATATGCCATTTTCGATCGAACAACTAATGCCCTTTC
TAAGCGTTCAAAGGACTATGACATTCAGAGCGTTGGTCATATGCCAACCA
GGAAACCTTTTATCCAGAAAATAAGTTCTACCTGCCTCGGGTGTA
FMO13312.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:28:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lt-RF | 5316 | CG18028-RF | 1041..2079 | 9..1045 | 4830 | 98.4 | Plus |
| lt-RE | 4404 | CG18028-RE | 1041..2079 | 9..1045 | 4830 | 98.4 | Plus |
| lt-RC | 2760 | CG18028-RC | 1093..2131 | 9..1045 | 4830 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:28:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 22938904..22939307 | 266..669 | 2020 | 100 | Plus |
| 2L | 23513712 | 2L | 22927578..22927765 | 9..196 | 940 | 100 | Plus |
| 2L | 23513712 | 2L | 22939354..22939540 | 668..854 | 840 | 98.9 | Plus |
| 2L | 23513712 | 2L | 22939594..22939766 | 854..1020 | 465 | 92.5 | Plus |
| 2L | 23513712 | 2L | 22938772..22938842 | 195..265 | 355 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:28:28 has no hits.
FMO13312.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:55:17 Download gff for
FMO13312.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lt-RA | 1049..2086 | 9..1044 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:56:48 Download gff for
FMO13312.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lt-RB | 1036..2073 | 9..1044 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:18:09 Download gff for
FMO13312.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lt-RC | 1093..2130 | 9..1044 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:18:09 Download gff for
FMO13312.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 22939354..22939540 | 668..854 | 98 | -> | Plus |
| 2L | 22939595..22939786 | 855..1044 | 92 | | Plus |
| 2L | 22927578..22927765 | 9..196 | 100 | -> | Plus |
| 2L | 22938774..22938842 | 197..265 | 100 | -> | Plus |
| 2L | 22938904..22939305 | 266..667 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:56:48 Download gff for
FMO13312.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 22831636..22832037 | 266..667 | 100 | -> | Plus |
| arm_2L | 22820310..22820497 | 9..196 | 100 | -> | Plus |
| arm_2L | 22831506..22831574 | 197..265 | 100 | -> | Plus |
| arm_2L | 22832086..22832272 | 668..854 | 98 | -> | Plus |
| arm_2L | 22832327..22832518 | 855..1044 | 92 | | Plus |
