FMO13313.5prime Sequence
683 bp (683 high quality bases) assembled on 2013-02-11
> FMO13313.5prime
CAGTCGACATGTTAAATTCACACAACACAAACCACAATAACAACAGCGCC
AGCAACAGCAACTACAACAAAGGCCACAAAATGCATTTGAAAAGTGCAAC
GGCAAAAGCAACAATAATGAAACATAAGTTAAGCAAATTTTACGGATACG
GTTGGATGCAAGTCTTCCTACTACTTACAGTCCTCGTGATTGGTAATCAA
AGTGCCTGGCAGGAGAATATACGACCAAAACTCTACGTTGAATTAGGTCC
CGAAGATGTACTGAAGTTTGTGGGAAACGAAAGTGTTGTGGATCACTTCA
AGCTCGTCACCAAGGATGGCAACAGTCTGCTCATCGGTGCCAGAAACACG
GTTTTTAATTTAAGCATACACGATCTCGTCGAGCAGCAGCGATTGGTCTG
GACATCGCCGGAGGATGATACCAAAATGTGTCTCGTCAAGGGCAAGGATG
AGGAGGCCTGCCAGAACTACATCCGCATCATGGTGGTGCCATCGCCGGGT
CGCCTTTTCGTTTGTGGCACCAACTCGTTCCGGCCCATGTGCAACACGTA
TATCATTAGTGACAGCAACTACACGCTGGAGGCCACGAAGAACGGACAGG
CGGTGTGCCCCTACGATCCGCGTCACAACTCCACCTCTGTGCTGGCCGGT
AAGTGTGCTAAAATTGCAAGCTTTCTAGACCAT
FMO13313.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:30:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sema-1a-RF | 7980 | CG18405-RF | 1397..2036 | 9..648 | 3200 | 100 | Plus |
| Sema-1a-RE | 9624 | CG18405-RE | 1077..1716 | 9..648 | 3200 | 100 | Plus |
| Sema-1a-RD | 9706 | CG18405-RD | 1283..1922 | 9..648 | 3200 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:30:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8564059..8564298 | 9..248 | 1200 | 100 | Plus |
| 2L | 23513712 | 2L | 8645025..8645239 | 451..665 | 1075 | 100 | Plus |
| 2L | 23513712 | 2L | 8640584..8640696 | 341..453 | 565 | 100 | Plus |
| 2L | 23513712 | 2L | 8631025..8631123 | 245..343 | 495 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:30:06 has no hits.
FMO13313.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:55:32 Download gff for
FMO13313.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sema-1a-RD | 1710..2361 | 1..652 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:57:45 Download gff for
FMO13313.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sema-1a-RD | 1275..1926 | 1..652 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:19:04 Download gff for
FMO13313.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sema-1a-RD | 1275..1926 | 1..652 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:19:04 Download gff for
FMO13313.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8645027..8645246 | 453..675 | 98 | | Plus |
| 2L | 8564051..8564296 | 1..246 | 98 | -> | Plus |
| 2L | 8631027..8631123 | 247..343 | 100 | -> | Plus |
| 2L | 8640587..8640695 | 344..452 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:57:45 Download gff for
FMO13313.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8564051..8564296 | 1..246 | 98 | -> | Plus |
| arm_2L | 8631027..8631123 | 247..343 | 100 | -> | Plus |
| arm_2L | 8640587..8640695 | 344..452 | 100 | -> | Plus |
| arm_2L | 8645027..8645246 | 453..675 | 98 | | Plus |
