FMO13314.5prime Sequence
1144 bp (1043 high quality bases) assembled on 2013-02-11
> FMO13314.5prime
CAGTCGACATGTTCGTCAAAGTGAAATTAGATGCCGAGGGAAACACAAGT
GTGATGCCGGAAATGTTCGAGCTCCACAATAATGCGACCATTGGTGAATT
GAAGCAAAAACTGGAGGTAAAAGTAGGTCTTCCCTTGGCTCGCCTAAACG
TACAGAGTTTTCACAAGTCTCTGGAAAACGATGAGTTTATTACAAATTTG
CTCAGAATTCCGGATAAAAGCGATTATACTTATCCGTCGACAACGCTTAA
TGGTACAGCCTTTTCGCTGTACCACGAAAATTCCTTTGTAGGATTTCTCC
AATTCTATACAATTCCAGAGGGCAAGAGCCAACTGGATTTCCTTAACATG
CCGAAGAGCTCTATGCTTCTGCCAGTGGACAGGCTTCCGCAGTTTTGCGA
GGCTTCGAACTCGCAAGATTCCTCCGCATCCAGTGCGTCGAACCAGACGA
ACGCCAGCTTCGAATCCGCAAGCACGAGCGCCAGCTCCGTAGCGCGAAAG
ACGAGAGTGTGCGCCTCCGATGAGGAATCGGCTGCCAAAAGAATACGAAG
CAACCAAGAGAACAGCGTGGTCAAGGTGGTTCCGCAGCAGAATCTGCTCG
CGGACAAACGAGCCGGCAGCATGGCTTCCATATTTGGTTCGAAGATCCAC
CTGATGAACTGCTGCAAGACGGAGACCAGCCGCACAAGCTGCTCAGTGGA
GCAGGCCGAGGAGTGCAAGGAGAGGAAGAAGGACTGCTGCACGCCAAAGA
ATTGTCGCAAGAGGGATACTCGGCCGCCGTATGCGAACACAATGCCCGAG
AACCGACGTTACGCCTTGGTGATAACTAACCAGAGTTCGTGCTCGGATGG
TGTGGACACTATCGCCCTAATGGAGCACTTTCATTCATATTCGAGGACAG
TGGATCGAGCGTCAGCGATCTCAATTTTAGTGAGTGTGCTCACGCAGACA
TTCGACTGCACATGCTGGTGTCTGCGAGGATACGAAACGGCCAATGGGTC
ATCGAGCAGTCGAAGGTGTGGAGCCGCCCCCCATCTGCAGCCCTCATTAA
GTTCCTCGATCTATGAGAACGAACCTTTGTCCTGTCTTGTCAGTCGATAG
TCGCTCGTGGTGAACTCGATTACTGGATCACGAACCCGCTGAAT
FMO13314.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:30:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7208-RB | 1563 | CG7208-RB | 93..1241 | 9..1138 | 5075 | 97.4 | Plus |
| CG7208-RA | 1607 | CG7208-RA | 181..1285 | 53..1138 | 4855 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:30:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18184658..18185146 | 541..53 | 2445 | 100 | Minus |
| 3R | 32079331 | 3R | 18184062..18184595 | 1063..540 | 2115 | 97 | Minus |
| 3R | 32079331 | 3R | 18185261..18185305 | 53..9 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:30:13 has no hits.
FMO13314.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:55:34 Download gff for
FMO13314.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7208-RB | 81..1185 | 1..1095 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:57:49 Download gff for
FMO13314.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7208-RB | 87..1191 | 1..1095 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:19:08 Download gff for
FMO13314.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7208-RB | 87..1191 | 1..1095 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:19:08 Download gff for
FMO13314.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18184028..18184593 | 542..1095 | 96 | <- | Minus |
| 3R | 18184658..18185145 | 54..541 | 100 | <- | Minus |
| 3R | 18185261..18185311 | 1..53 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:57:49 Download gff for
FMO13314.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14009750..14010315 | 542..1095 | 96 | <- | Minus |
| arm_3R | 14010380..14010867 | 54..541 | 100 | <- | Minus |
| arm_3R | 14010983..14011033 | 1..53 | 92 | | Minus |
